CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g47960

Gene name ATRABA4C

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.82 90.9 At5g47960 834847 ATRABA4C Encodes a small molecular weight g-protein. S.X. H.G.
0.49 63.5 At3g57530 824920 CPK32 (CALCIUM-DEPENDENT PROTEIN KINASE 32) Calcium-dependent Protein Kinase. ABA signaling component that regulates the ABA-responsive gene expression via ABF4. AtCPK32 has autophosphorylation activity and can phosphorylate ABF4 in vitro S.X. H.G.
0.46 59.8 At1g11050 837646 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.43 55.3 At1g14480 838010 protein binding F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVA S.X. H.G.
0.43 55.3 At1g61370 842431 S-locus lectin protein kinase family protein F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA S.X. H.G.
0.42 53.9 At5g43170 834334 AZF3 (ARABIDOPSIS ZINC-FINGER PROTEIN 3) Encodes zinc finger protein. mRNA levels are elevated in response to high salinity and low temperature. The protein is localized to the nucleus and acts as a transcriptional repressor. S.X. H.G.
0.41 52.4 At5g47910 834842 RBOHD (RESPIRATORY BURST OXIDASE HOMOLOGUE D) NADPH/respiratory burst oxidase protein D (RbohD).Interacts with AtrbohF gene to fine tune the spatial control of ROI production and hypersensitive response to cell in and around infection site. S.X. H.G.
0.41 52.4 At2g39650 818548 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.40 50.8 At5g64660 836587 U-box domain-containing protein F:ubiquitin-protein ligase activity, binding;P:response to chitin;C:ubiquitin ligase complex;POMBFV S.X. H.G.
0.39 48.4 At5g66210 836753 CPK28 member of Calcium Dependent Protein Kinase S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
173.3 100.0 GSM39197 RRE1_Chitin3 GSE2169 rre1 and rre2 mutants
163.9 99.9 GSM39198 RRE1_Chitin4 GSE2169 rre1 and rre2 mutants
161.8 99.9 GSM39196 RRE1_Chitin2 GSE2169 rre1 and rre2 mutants
136.6 99.9 GSM39195 RRE1_Chitin1 GSE2169 rre1 and rre2 mutants
120.8 99.9 GSM39211 RRE2_Chitin1 GSE2169 rre1 and rre2 mutants
111.4 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
98.9 99.9 GSM39212 RRE2_Chitin2 GSE2169 rre1 and rre2 mutants
92.9 99.9 GSM39214 RRE2_Chitin4 GSE2169 rre1 and rre2 mutants
79.5 99.9 E-MEXP-807-raw-cel-1173273170
75.3 99.9 GSM39213 RRE2_Chitin3 GSE2169 rre1 and rre2 mutants
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.33 7e-27 121 At3g12160 820393 RABA4D (RAB GTPASE HOMOLOG A4D) Encodes RABA4D, a member of the Arabidopsis RabA4 subfamily of Rab GTPase proteins. It is transported in exocytic vesicles to the apical tip of pollen tubes where it appears to promote tip growth. Proper localization of RabA4d depends on ROP1, RIC3, and RIC4 activity. C.G. S.X.
0.23 2e-14 79 At4g18430 827574 AtRABA1e (Arabidopsis Rab GTPase homolog A1e) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBAV C.G. S.X.
0.11 9e-11 67 At2g33870 817957 ArRABA1h (Arabidopsis Rab GTPase homolog A1h) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:unknown;MOFPBVA C.G. S.X.
0.15 2e-9 63 At1g07410 837253 ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B) F:protein binding, GTP binding, GTPase activity;P:intracellular protein transport, signal transduction, nucleocytoplasmic transport, protein transport, small GTPase mediated signal transduction;C:endosome, plasma membrane, cell plate;MOFPBAV C.G. S.X.
0.18 6e-9 61 At5g60860 836207 AtRABA1f (Arabidopsis Rab GTPase homolog A1f) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:unknown;MOFPBAV C.G. S.X.
0.07 6e-9 61 At5g45750 834614 AtRABA1c (Arabidopsis Rab GTPase homolog A1c) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane, nucleus, vacuole;MOFPBAV C.G. S.X.
0.08 9e-8 57 At2g31680 817724 AtRABA5d (Arabidopsis Rab GTPase homolog A5d) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:unknown;MOFPBVA C.G. S.X.
0.13 3e-7 56 At4g39990 830160 RABA4B (RAB GTPASE HOMOLOG A4B) GTP-binding protein ATGB3 C.G. S.X.
0.05 3e-7 56 At4g18800 827614 ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 2e-3 44 Glycine max GmaAffx.70703.2.S1_at AW595931 - - 6e-18 At5g65270 AtRABA4a (Arabidopsis Rab GTPase homolog A4a) C.G. S.X.
0.16 2e-4 46 Hordeum vulgare Contig11759_at Contig11759 - - 1e-5 At3g12160 RABA4D (RAB GTPASE HOMOLOG A4D) C.G. S.X.
0.25 1e-17 91 Oryza sativa Os09g0281700 X59276.1 - Ras-related protein RGP1 (GTP-binding regulatoryprotein RGP1) 1e-17 At5g47960 ATRABA4C C.G. S.X.
0.37 5e-50 198 Populus trichocarpa Ptp.7187.1.S1_at CF234904 hypothetical protein - 7e-50 At5g47960 ATRABA4C C.G. S.X.
0.26 2e-8 59 Triticum aestivum Ta.12940.1.A1_at CD491400 - - 2e-8 At5g47960 ATRABA4C C.G. S.X.
0.28 9e-36 149 Vitis vinifera 1619728_at BM437855 - - 1e-35 At3g12160 RABA4D (RAB GTPASE HOMOLOG A4D) C.G. S.X.
0.09 1e-11 69 Zea mays Zm.16982.2.A1_at BM080083 - - 4e-8 At4g39990 RABA4B (RAB GTPASE HOMOLOG A4B) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0007264 Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
L GO:0015031 The directed movement of proteins into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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