CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g47950

Gene name transferase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.31 33.8 At5g47950 834846 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO S.X. H.G.
0.57 73.8 At1g66800 842998 cinnamyl-alcohol dehydrogenase family / CAD family similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase S.X. H.G.
0.50 65.3 At3g29250 822580 copper ion binding / oxidoreductase F:oxidoreductase activity, copper ion binding;P:metabolic process;C:cellular_component unknown;BOFMPAV S.X. H.G.
0.44 57.2 At5g23840 832449 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.40 50.8 At5g42590 834266 CYP71A16 putative cytochrome P450 S.X. H.G.
0.30 32.1 At5g26260 832695 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
207.3 100.0 GSM133945 Murray_2-1_T0-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
124.0 99.9 GSM184480 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
109.5 99.9 GSM184477 Lateral Root Cap root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
107.2 99.9 GSM133951 Murray_2-7_T12-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
94.8 99.9 GSM133952 Murray_2-8_T14-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
94.4 99.9 GSM133950 Murray_2-6_T10-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
92.9 99.9 GSM133953 Murray_2-9_T16-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
87.3 99.9 GSM265433 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
82.4 99.9 GSM231201 chl1 at T0, biological rep3 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
76.1 99.9 GSM266665 Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 4 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.36 1e-23 111 At3g30280 822728 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO C.G. S.X.
0.28 3e-12 73 At4g15390 827205 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO C.G. S.X.
0.02 4e-2 40 At1g55830 842033 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPAV C.G. S.X.
0.02 2e-1 38 Atmg01250 - - hypothetical protein C.G. S.X.
0.01 6e-1 36 At4g15400 827208 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:unknown;C:cellular_component unknown;PFB C.G. S.X.
0.01 3e+0 34 At5g50340 835101 ATP binding / damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding F:damaged DNA binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:DNA repair;C:cellular_component unknown;BOAPMV C.G. S.X.
0.01 3e+0 34 At4g14150 827054 PAKRP1 (PHRAGMOPLAST-ASSOCIATED KINESIN-RELATED PROTEIN 1) Microtubule motor kinesin PAKRP1/Kinesin-12A. Together with PAKRP1L/Kinesin-12B, serve as linkers of the plus ends of antiparallel microtubules in the phragmoplast. C.G. S.X.
0.01 3e+0 34 At3g14120 820629 - F:molecular_function unknown;P:transport;C:nuclear pore;MFPO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e-2 40 Glycine max Gma.11190.1.S1_at CD402535 - - 7e-65 At2g31610 40S ribosomal protein S3 (RPS3A) C.G. S.X.
0.02 1e+0 34 Hordeum vulgare Contig20359_at Contig20359 - - 2e+0 At4g26110 NAP1 C.G. S.X.
0.01 1e+0 36 Oryza sativa Os.51081.1.S1_at - - - 0 C.G. S.X.
0.02 9e-1 36 Populus trichocarpa Ptp.4252.1.S1_at DN499823 hypothetical protein - 1e-2 At5g08290 YLS8 C.G. S.X.
0.02 1e+1 32 Triticum aestivum TaAffx.85394.1.S1_at CA623075 - - 1e+0 At3g25855 unknown protein C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1619052_at CB974158 hypothetical protein LOC100247533 - 8e-4 At1g61450 unknown protein C.G. S.X.
0.02 4e+0 32 Zea mays Zm.1572.1.A1_at BQ538744 hypothetical protein LOC100217100 - 4e+0 At5g08330 TCP family transcription factor, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00355 Acyltransferase

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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