Gene omics information

Query gene ID At5g47870
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g47870834838unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOS.X.H.G.
0.4253.9At1g08470837368strictosidine synthase family proteinF:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endoplasmic reticulum, plasma membrane;PBMOFAS.X.H.G.
0.3846.7At2g22370816769unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOS.X.H.G.
0.3745.0At1g72480843580-F:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus;MFPOS.X.H.G.
0.3643.6At5g23550832421-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPS.X.H.G.
0.3643.6At1g30825839965DIS2 (DISTORTED TRICHOMES 2)Involved in trichome maturation. mutant displays enlarged trichomesS.X.H.G.
0.3541.6At5g41760834180nucleotide-sugar transporter family proteinF:nucleotide-sugar transmembrane transporter activity, CMP-sialic acid transmembrane transporter activity;P:carbohydrate transport, nucleotide-sugar transport;C:endomembrane system, integral to membrane, Golgi membrane;MOPFS.X.H.G.
0.3541.6At3g49850824147TRB3 (TELOMERE REPEAT BINDING FACTOR 3)Encodes a telomeric DNA binding protein. In vitro, the protein preferentially binds double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.S.X.H.G.
0.3439.8At5g02280831680synbindin, putativeF:molecular_function unknown;P:transport, ER to Golgi vesicle-mediated transport;C:cis-Golgi network;MFOPS.X.H.G.
0.3235.7At1g08750837397GPI-anchor transamidase, putativeF:GPI-anchor transamidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MPOFABS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
59.599.8GSM133774Lindsey_1-26_torpedo-meristem_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
30.899.7GSM183516MYB51_OE_rep1GSE7570ATR1_like_Clade_OE_and_miR
22.499.6GSM184151ATR1_OE_rep2GSE7570ATR1_like_Clade_OE_and_miR
17.099.5GSM265432Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
16.099.5GSM183515ATR1_OE_rep1GSE7570ATR1_like_Clade_OE_and_miR
14.099.4GSM265474Arabidopsis, whole roots, -Fe, 72 hour, rep 2GSE10502Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
13.799.4GSM265471Arabidopsis, whole roots, -Fe, 48 hour, rep 1GSE10502Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
13.399.4GSM184523Stele root cells 2hr KCl control treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
13.299.4E-MEXP-265-raw-cel-414617783
11.899.3GSM265473Arabidopsis, whole roots, -Fe, 72 hour, rep 1GSE10502Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.027e-238At2g01570814686RGA1 (REPRESSOR OF GA1-3 1)Member of the VHIID/DELLA regulatory family. Contains homopolymeric serine and threonine residues, a putative nuclear localization signal, leucine heptad repeats, and an LXXLL motif. Putative transcriptional regulator repressing the gibberellin response and integration of phytohormone signalling. DELLAs repress cell proliferation and expansion that drives plant growth. The protein undergoes degradation in response to GA via the 26S proteasome. RGA1 binds to PIF3 and inhibits its DNA binding activity and thus affects the expression of PIF3 regulated genes. RGA may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Represses GA-induced vegetative growth and floral initiation. Rapidly degraded in response to GA. Involved in fruit and flower development.C.G.S.X.
0.017e-238At2g02790814808IQD29 (IQ-domain 29)F:calmodulin binding;P:biological_process unknown;C:plasma membrane;MOFPBVAC.G.S.X.
0.023e-136At1g20490838637AMP-dependent synthetase and ligase family proteinF:4-coumarate-CoA ligase activity;P:phenylpropanoid metabolic process, metabolic process;C:unknown;BOMFPAVC.G.S.X.
0.021e+034At5g24880832557-F:unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVAC.G.S.X.
0.021e+034At5g35960833587protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAC.G.S.X.
0.041e+034At5g20820832205auxin-responsive protein-relatedF:molecular_function unknown;P:response to auxin stimulus;C:unknown;PC.G.S.X.
0.021e+034At3g19090821444RNA-binding protein, putativeF:RNA binding, nucleotide binding, nucleic acid binding;P:RNA processing;C:ribonucleoprotein complex, nucleus;MPOFBC.G.S.X.
0.021e+034At3g18180821345transferase, transferring glycosyl groupsF:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PMOBFC.G.S.X.
0.021e+034At3g18170821344transferase, transferring glycosyl groupsF:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PMBOFC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.253e-550Glycine maxGma.7595.1.S1_atBE820889--3e-5At5g47870unknown proteinC.G.S.X.
0.126e-754Hordeum vulgareHV_CEb0011D15r2_s_atHV_CEb0011D15r2--1e-6At5g47870unknown proteinC.G.S.X.
0.177e-1065Oryza sativaOs09g0512800AA753646-Conserved hypothetical protein2e-1At2g21510DNAJ heat shock N-terminal domain-containing proteinC.G.S.X.
0.325e-22105Populus trichocarpaPtpAffx.2542.2.S1_a_atCN522327hypothetical protein-7e-22At5g47870unknown proteinC.G.S.X.
0.122e-1169Triticum aestivumTa.18931.2.S1_a_atCA656734--2e-11At5g47870unknown proteinC.G.S.X.
0.171e-22105Vitis vinifera1614492_atCF404505hypothetical protein LOC100260946-7e-22At5g47870unknown proteinC.G.S.X.
0.099e-1579Zea maysZm.9440.1.A1_atCF635755snRK1-interacting protein 1-3e-14At5g47870unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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