CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g47810

Gene name PFK2 (PHOSPHOFRUCTOKINASE 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.73 85.5 At5g47810 834832 PFK2 (PHOSPHOFRUCTOKINASE 2) F:6-phosphofructokinase activity;P:glycolysis;C:cytosol, 6-phosphofructokinase complex;BOMFPAV S.X. H.G.
0.95 97.0 At1g02700 839492 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PMFO S.X. H.G.
0.94 96.7 At5g42290 834234 transcription activator-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.92 96.0 At1g27990 839692 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.91 95.6 At4g27530 828862 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.90 95.1 At2g19900 816509 ATNADP-ME1 (NADP-malic enzyme 1) The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME1 is expressed in response to developmental and cell-specific signals. S.X. H.G.
0.90 95.1 At3g58450 825014 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAOFM S.X. H.G.
0.86 93.1 At3g11050 820276 ATFER2 (ferritin 2) F:oxidoreductase activity, ferric iron binding, binding, transition metal ion binding;P:response to oxidative stress, cellular iron ion homeostasis, response to abscisic acid stimulus, iron ion transport;C:chloroplast;MBPOAF S.X. H.G.
0.86 93.1 At4g21020 827849 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:unknown;P:embryonic development ending in seed dormancy;C:unknown;OMBPFVA S.X. H.G.
0.85 92.4 At5g60760 836197 2-phosphoglycerate kinase-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPBAFV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
641.9 100.0 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
359.0 100.0 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
210.6 100.0 GSM133117 RIKEN-YAMAUCHI1A GSE5687 AtGenExpress: Different temperature treatment of seeds
188.6 100.0 GSM131708 ATGE_84_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
184.7 100.0 GSM131706 ATGE_84_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
181.6 100.0 GSM131702 ATGE_82_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
161.8 99.9 GSM131701 ATGE_82_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
159.5 99.9 GSM131700 ATGE_82_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
157.3 99.9 GSM131707 ATGE_84_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
143.1 99.9 GSM131705 ATGE_83_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 2e-4 48 At4g32840 829420 PFK6 (PHOSPHOFRUCTOKINASE 6) F:6-phosphofructokinase activity;P:glycolysis;C:cytosol, 6-phosphofructokinase complex;BOMFPAV C.G. S.X.
0.04 2e-4 48 At4g29220 829043 PFK1 (PHOSPHOFRUCTOKINASE 1) F:6-phosphofructokinase activity;P:glycolysis;C:cytosol, 6-phosphofructokinase complex, plasma membrane;BOMPFAV C.G. S.X.
0.03 3e-3 44 At5g61580 836279 PFK4 (PHOSPHOFRUCTOKINASE 4) F:6-phosphofructokinase activity;P:glycolysis;C:6-phosphofructokinase complex, chloroplast;BOMPFAV C.G. S.X.
0.02 2e-1 38 At2g40440 818638 BTB/POZ domain-containing protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;PMO C.G. S.X.
0.01 7e-1 36 At2g22490 816782 CYCD2 encodes a D-type cyclin whose transcription level is regulated by sucrose but not phytohormones or nitrate. Protein physically interacts with CDC2A. CycD2 kinase activity is regulated by sequestration of CycD2 protein in a form inaccessible to immunoprecipitation and probably not complexed to CDC2A. C.G. S.X.
0.01 7e-1 36 At1g10410 837581 - F:unknown;P:N-terminal protein myristoylation;C:chloroplast;POMF C.G. S.X.
0.02 7e-1 36 At1g73820 843718 Ssu72-like family protein F:phosphoprotein phosphatase activity;P:mRNA processing;C:chloroplast;MFPO C.G. S.X.
0.02 3e+0 34 At5g06410 830529 DNAJ heat shock N-terminal domain-containing protein F:protein binding, heat shock protein binding, chaperone binding;P:protein folding;C:unknown;BOMFP C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 4e-6 54 Glycine max Gma.15695.1.A1_at BE022791 - - 2e-6 At5g47810 PFK2 (PHOSPHOFRUCTOKINASE 2) C.G. S.X.
0.05 2e-2 40 Hordeum vulgare Contig6490_at Contig6490 - - 2e-35 At5g56630 PFK7 (PHOSPHOFRUCTOKINASE 7) C.G. S.X.
0.20 5e-28 127 Oryza sativa Os04g0469500 AK071065.1 - Phosphofructokinase family protein 3e-28 At5g47810 PFK2 (PHOSPHOFRUCTOKINASE 2) C.G. S.X.
0.24 5e-24 113 Populus trichocarpa Ptp.4470.1.S1_at CV272216 hypothetical protein - 3e-24 At5g47810 PFK2 (PHOSPHOFRUCTOKINASE 2) C.G. S.X.
0.21 5e-20 99 Triticum aestivum TaAffx.8265.1.S1_at BJ296666 - - 3e-20 At5g47810 PFK2 (PHOSPHOFRUCTOKINASE 2) C.G. S.X.
0.12 4e-27 121 Vitis vinifera 1611851_at BQ799617 hypothetical LOC100251605 - 7e-27 At5g47810 PFK2 (PHOSPHOFRUCTOKINASE 2) C.G. S.X.
0.04 2e-2 40 Zea mays Zm.13029.1.A1_at CA400580 - - 2e+0 At4g32840 PFK6 (PHOSPHOFRUCTOKINASE 6) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006096 The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00111 Glycolysis/gluconeogenesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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