CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g47780

Gene name GAUT4 (Galacturonosyltransferase 4)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g47780 834829 GAUT4 (Galacturonosyltransferase 4) Encodes a protein with putative galacturonosyltransferase activity. S.X. H.G.
0.55 70.6 At5g14430 831294 dehydration-responsive protein-related F:unknown;P:unknown;C:Golgi apparatus, plasma membrane, plant-type cell wall;PBO S.X. H.G.
0.46 59.8 At5g19770 832097 TUA3 tubulin 3 S.X. H.G.
0.19 12.7 At4g18060 827531 clathrin binding F:clathrin binding;P:unknown;C:unknown;MOFPB S.X. H.G.
0.18 11.4 At3g55480 824714 adaptin family protein F:protein binding, binding;P:intracellular protein transport, vesicle-mediated transport;C:membrane coat, endomembrane system;BMFOP S.X. H.G.
0.18 11.4 At2g20190 816539 CLASP (CLIP-ASSOCIATED PROTEIN) Encodes a microtubule-associated protein that is involved in both cell division and cell expansion. It likely promotes microtubule stability. S.X. H.G.
0.15 7.8 At1g60070 842301 binding / clathrin binding / protein binding / protein transporter F:protein transporter activity, protein binding, clathrin binding, binding;P:intracellular protein transport, vesicle-mediated transport, protein transport;C:membrane coat, Golgi apparatus part, Golgi apparatus, clathrin adaptor complex;MFOPB S.X. H.G.
0.09 2.8 At5g28850 833004 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:endomembrane system;MOPF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.9 99.3 GSM142905 WW002_ATH1_A1-willa-CON-REP3 GSE6181 Assembly of the cell wall pectic matrix.
10.2 99.2 GSM242959 Steroid day 3 (day3D1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
9.7 99.1 GSM133966 Fukuda_1-11_10A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
9.7 99.1 GSM242957 Mock day 3 (day3E1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
8.8 99.0 GSM133964 Fukuda_1-9_8A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
8.8 99.0 GSM147963 WT Globular Stage Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
8.5 99.0 GSM133965 Fukuda_1-10_8B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
8.1 98.9 GSM133967 Fukuda_1-12_10B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
7.7 98.9 GSM184896 Arabidopsis, root cells, cortex, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
7.5 98.8 GSM147964 WT Globular Stage Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 1e-6 56 At1g06780 837189 GAUT6 (Galacturonosyltransferase 6) Encodes a protein with putative galacturonosyltransferase activity. C.G. S.X.
0.02 2e-4 48 At2g30575 817607 LGT5 (LOS GLYCOSYLTRANSFERASE 5) Encodes a protein with putative galacturonosyltransferase activity. C.G. S.X.
0.01 1e-2 42 At3g58790 825048 GAUT15 (Galacturonosyltransferase 15) Encodes a protein with putative galacturonosyltransferase activity. C.G. S.X.
0.02 1e-2 42 At2g46480 819257 GAUT2 Encodes a protein with putative galacturonosyltransferase activity. C.G. S.X.
0.02 2e-1 38 At5g15470 831400 GAUT14 (Galacturonosyltransferase 14) Encodes a protein with putative galacturonosyltransferase activity. C.G. S.X.
0.01 2e-1 38 At5g49720 835035 ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1) Encodes a membrane-bound endo-1,4-beta-D-glucanase, involved in cellulose biosynthesis. Loss-of-function mutants have severe cellulose-deficient phenotypes. During cell elongation, KOR1 is associated with Golgi apparatus and early endosome. Inhibition of cellulose biosynthesis promoted a redistribution of KOR1 in subcellular locations. These observations suggest that deposition of cellulose involves the intracellular cycling of KOR1. C.G. S.X.
0.02 2e-1 38 At3g10195 3768836 - Encodes a defensin-like (DEFL) family protein. C.G. S.X.
0.03 9e-1 36 At3g25140 822105 QUA1 (QUASIMODO 1) Quasimodo1, encodes a glycosyltransferase, involved in homogalacturonan biosynthesis; mutant shows cell adhesion defect and lower wall uronic acid content. C.G. S.X.
0.01 9e-1 36 At3g02350 820474 GAUT9 (Galacturonosyltransferase 9) Encodes a protein with putative galacturonosyltransferase activity. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.31 2e-55 218 Glycine max GmaAffx.9545.1.S1_at BI699570 - - 7e-56 At5g47780 GAUT4 (Galacturonosyltransferase 4) C.G. S.X.
0.15 5e-13 75 Hordeum vulgare Contig12834_at Contig12834 - - 6e-13 At5g47780 GAUT4 (Galacturonosyltransferase 4) C.G. S.X.
0.13 1e-10 69 Oryza sativa Os09g0480400 AK100641.1 - Glycosyl transferase, family 8 protein 9e-11 At5g47780 GAUT4 (Galacturonosyltransferase 4) C.G. S.X.
0.31 4e-16 87 Populus trichocarpa PtpAffx.39679.1.A1_s_at CA930206 glycosyltransferase, CAZy family GT8 - 9e-17 At5g47780 GAUT4 (Galacturonosyltransferase 4) C.G. S.X.
0.12 1e-6 56 Triticum aestivum TaAffx.32869.1.S1_at CA498726 - - 8e-7 At5g47780 GAUT4 (Galacturonosyltransferase 4) C.G. S.X.
0.29 2e-88 325 Vitis vinifera 1613790_at BQ799915 hypothetical protein LOC100258406 - 4e-88 At5g47780 GAUT4 (Galacturonosyltransferase 4) C.G. S.X.
0.11 3e-8 59 Zea mays Zm.15705.1.S1_at CD441079 transferase, transferring glycosyl groups - 1e-4 At4g38270 GAUT3 (Galacturonosyltransferase 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0016051 The chemical reactions and pathways resulting in the formation of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00359 Glucosyltransferase
00437 Xyloglucan biosynthesis and modification

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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