CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g47770

Gene name FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g47770 834828 FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1) Encodes a protein with farnesyl diphosphate synthase activity. S.X. H.G.
0.86 93.1 At5g48230 834876 ACAT2 (ACETOACETYL-COA THIOLASE 2) F:acetyl-CoA C-acetyltransferase activity, catalytic activity;P:embryonic development ending in seed dormancy;C:peroxisome, plasma membrane;BOMFAP S.X. H.G.
0.80 89.8 At5g27450 832804 MK (MEVALONATE KINASE) Encodes a protein with mevalonate kinase activity involved in the mevalonate pathway. S.X. H.G.
0.67 81.6 At2g38700 818452 MVD1 (MEVALONATE DIPHOSPHATE DECARBOXYLASE 1) Encodes mevalonate diphosphate decarboxylase, the enzyme that catalyzes the synthesis of isopentenyl diphosphate, used in sterol and isoprenoid biosynthesis. The protein appears to form a homodimeric complex. Incidentally, it was shown that the Arabidopsis MVD protein could also interact with its yeast homolog to form a heterodimer. S.X. H.G.
0.40 50.8 At2g34560 818020 katanin, putative F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:protein metabolic process;C:unknown;OBMFPAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
32.1 99.7 GSM266669 Arabidopsis, root cells, cortex, -Fe, replicate 1 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
28.8 99.7 GSM184895 Arabidopsis, root cells, cortex, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
25.3 99.6 GSM266671 Arabidopsis, root cells, cortex, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
25.2 99.6 GSM265423 Arabidopsis, root, longitudinal zone 3, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
22.2 99.6 GSM265420 Arabidopsis, root, longitudinal zone 2, standard conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
21.6 99.6 GSM184897 Arabidopsis, root cells, cortex, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
21.3 99.6 GSM265421 Arabidopsis, root, longitudinal zone 2, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
20.2 99.6 GSM184896 Arabidopsis, root cells, cortex, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
19.6 99.6 GSM265411 Arabidopsis, whole roots, -Fe, replicate 1 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
17.4 99.5 GSM265413 Arabidopsis, whole roots, -Fe, replicate 3 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.82 0 1005 At4g17190 827430 FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) Encodes a protein with farnesyl diphosphate synthase activity, which catalyzes the rate limiting step in isoprenoid biosynthesis. Its mRNA is most abundantly expressed in flowers. C.G. S.X.
0.01 6e-1 36 At5g49770 835040 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 2e+0 34 At5g61080 - C.G. S.X.
0.01 2e+0 34 At4g32520 829387 SHM3 (SERINE HYDROXYMETHYLTRANSFERASE 3) F:pyridoxal phosphate binding, glycine hydroxymethyltransferase activity, catalytic activity;P:glycine metabolic process, L-serine metabolic process;C:chloroplast;OBMPFAV C.G. S.X.
0.01 2e+0 34 At4g17210 827432 myosin heavy chain-related F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPAV C.G. S.X.
0.01 2e+0 34 At3g53230 824489 cell division cycle protein 48, putative / CDC48, putative F:hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding;P:response to cadmium ion;C:cytosol, nucleolus, plasma membrane;BOMFPAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.32 2e-17 91 Glycine max Gma.1844.1.S1_at CD396215 - - 2e-26 At4g17190 FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) C.G. S.X.
0.24 1e-12 73 Hordeum vulgare Contig4003_at Contig4003 - - 4e-12 At5g47770 FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1) C.G. S.X.
0.28 2e-24 115 Oryza sativa Os01g0703400 D85317.1 - Farnesyl pyrophosphate synthetase (FPP synthetase)(FPS) (Farnesyl diphosphate synthetase) [Includes:Dimethylallyltranstransferase (EC 2.5.1.1) 1e-24 At5g47770 FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1) C.G. S.X.
0.49 5e-79 295 Populus trichocarpa Ptp.4515.1.S1_s_at CV253179 hypothetical protein - 5e-79 At5g47770 FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1) C.G. S.X.
0.22 1e-14 81 Triticum aestivum Ta.9592.1.S1_at CK209018 - - 2e-16 At4g17190 FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) C.G. S.X.
0.47 4e-73 274 Vitis vinifera 1621231_at BQ794787 farnesyl diphosphate synthase - 2e-72 At5g47770 FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1) C.G. S.X.
0.19 8e-20 97 Zea mays Zm.317.1.S1_at AF330036.1 geranylgeranyl-diphosphate synthase - 3e-12 At4g17190 FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0045337 The chemical reactions and pathways resulting in the formation of farnesyl diphosphate.
L GO:0008299 The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00046 Isoprenoid biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00900 Terpenoid backbone biosynthesis
01062 Biosynthesis of terpenoids and steroids
01066 Biosynthesis of alkaloids derived from terpenoid and polyketide
01070 Biosynthesis of plant hormones
01100 Metabolic pathways
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