CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g47710

Gene name C2 domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g47710 834822 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;MPFO S.X. H.G.
0.38 46.7 At4g35020 829654 ARAC3 (ARABIDOPSIS RAC-LIKE 3) A member of ROP GTPase gene family; Encodes a Rho-like GTP binding protein. S.X. H.G.
0.31 33.8 At3g11730 820345 ATFP8 Encodes a member of the Rab GTPase family of proteins. This protein interacts with the tail region of a myosin XI protein (AT5G43900) in a GTP-dependent manner. It has also been identified as an isoprenylated protein. S.X. H.G.
0.30 32.1 At4g19350 827676 EMB3006 (embryo defective 3006) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PMF S.X. H.G.
0.25 22.6 At3g24010 821986 ING1 (INHIBITOR OF GROWTH 1) ING1 encodes a member of the Inhibitor of Growth family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA. S.X. H.G.
0.24 20.7 At5g55160 835609 SUMO2 (SMALL UBIQUITIN-LIKE MODIFIER 2) Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. SUMO2 can form SUMO chains through lysine residue 10 during in vitro assays. S.X. H.G.
0.24 20.7 At1g71310 843472 unknown protein F:molecular_function unknown;P:unknown;C:unknown;POB S.X. H.G.
0.21 15.8 At3g33520 823150 ATARP6 Encodes ACTIN-RELATED PROTEIN6 (ARP6), a putative component of a chromatin-remodeling complex. Required for both histone acetylation and methylation of the FLC chromatin in Arabidopsis. Along with PIE1 forms a complex to deposit modified histone H2A.Z at several loci within the genome. This modification alters the expression of the target genes (i.e. FLC, MAF4, MAF6. Located at specific regions of the nuclear periphery. Expression throughout plants shown by in-situ and immunolocalization methods. Mutants show defects in fertility, leaf, flower and inflorescence development and shorter flowering times. S.X. H.G.
0.21 15.8 At5g09920 830853 NRPB4 Non-catalytic subunit specific to DNA-dependent RNA polymerase II; the ortholog of budding yeast RPB4) S.X. H.G.
0.20 14.4 At1g16970 838268 KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG) Ku80 and ku70 form the heterodimer complex Ku, required for proper maintenance of the telomeric C strand. Ku regulates the extension of the telomeric G strand. Interacts with WEX, and this interaction stimulates the WEX exonuclease activity. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
39.6 99.8 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
38.3 99.8 GSM10441 WT Ovule 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
34.9 99.7 GSM10442 WT Ovule 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
27.2 99.7 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
25.9 99.7 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
25.2 99.6 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
25.0 99.6 GSM10446 WT 24-Hr Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
23.1 99.6 GSM10477 lec1-1 24-Hr Seed 1 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
22.5 99.6 GSM10478 lec1-1 24-Hr Seed 2 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
21.8 99.6 GSM10445 WT 24-Hr Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.07 4e-3 42 At1g70790 843416 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO C.G. S.X.
0.01 1e+0 34 At4g36120 829769 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV C.G. S.X.
0.02 1e+0 34 At3g58830 825052 haloacid dehalogenase (HAD) superfamily protein F:catalytic activity;P:unknown;C:chloroplast;BOFP C.G. S.X.
0.01 1e+0 34 At3g17750 821043 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytosol, plasma membrane;MOPFBVA C.G. S.X.
0.04 1e+0 34 At1g66360 842954 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO C.G. S.X.
0.05 1e+0 34 At1g23140 838922 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPFO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.24 6e-6 52 Glycine max Gma.8020.1.S1_at CA820139 - - 8e-6 At5g47710 C2 domain-containing protein C.G. S.X.
0.04 7e+0 30 Hordeum vulgare EBma03_SQ003_I18_at EBma03_SQ003_I18 - - 6e-1 At2g43018 CPuORF17 (Conserved peptide upstream open reading frame 17) C.G. S.X.
0.04 2e+0 34 Oryza sativa OsAffx.20981.1.S1_at - - - 0 C.G. S.X.
0.22 6e-6 52 Populus trichocarpa PtpAffx.100788.1.S1_a_at CK091015 hypothetical protein - 8e-6 At5g47710 C2 domain-containing protein C.G. S.X.
0.04 1e+0 34 Triticum aestivum TaAffx.108542.1.S1_at CA691321 - - 1e+0 At5g48655 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.07 1e-9 61 Vitis vinifera 1611449_at CD797700 hypothetical protein LOC100251803 - 6e-9 At5g47710 C2 domain-containing protein C.G. S.X.
0.03 1e-1 36 Zea mays Zm.17003.1.S1_at BQ619521 DNA binding protein - 3e-1 At5g47710 C2 domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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