Gene omics information

Query gene ID At5g47710
Gene name C2 domain-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g47710834822C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;MPFOS.X.H.G.
0.3846.7At4g35020829654ARAC3 (ARABIDOPSIS RAC-LIKE 3)A member of ROP GTPase gene family; Encodes a Rho-like GTP binding protein.S.X.H.G.
0.3133.8At3g11730820345ATFP8Encodes a member of the Rab GTPase family of proteins. This protein interacts with the tail region of a myosin XI protein (AT5G43900) in a GTP-dependent manner. It has also been identified as an isoprenylated protein.S.X.H.G.
0.3032.1At4g19350827676EMB3006 (embryo defective 3006)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PMFS.X.H.G.
0.2522.6At3g24010821986ING1 (INHIBITOR OF GROWTH 1)ING1 encodes a member of the Inhibitor of Growth family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.S.X.H.G.
0.2420.7At5g55160835609SUMO2 (SMALL UBIQUITIN-LIKE MODIFIER 2)Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. SUMO2 can form SUMO chains through lysine residue 10 during in vitro assays.S.X.H.G.
0.2420.7At1g71310843472unknown proteinF:molecular_function unknown;P:unknown;C:unknown;POBS.X.H.G.
0.2115.8At3g33520823150ATARP6Encodes ACTIN-RELATED PROTEIN6 (ARP6), a putative component of a chromatin-remodeling complex. Required for both histone acetylation and methylation of the FLC chromatin in Arabidopsis. Along with PIE1 forms a complex to deposit modified histone H2A.Z at several loci within the genome. This modification alters the expression of the target genes (i.e. FLC, MAF4, MAF6. Located at specific regions of the nuclear periphery. Expression throughout plants shown by in-situ and immunolocalization methods. Mutants show defects in fertility, leaf, flower and inflorescence development and shorter flowering times.S.X.H.G.
0.2115.8At5g09920830853NRPB4Non-catalytic subunit specific to DNA-dependent RNA polymerase II; the ortholog of budding yeast RPB4)S.X.H.G.
0.2014.4At1g16970838268KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG)Ku80 and ku70 form the heterodimer complex Ku, required for proper maintenance of the telomeric C strand. Ku regulates the extension of the telomeric G strand. Interacts with WEX, and this interaction stimulates the WEX exonuclease activity.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
39.699.8GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
38.399.8GSM10441WT Ovule 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
34.999.7GSM10442WT Ovule 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
27.299.7GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
25.999.7GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
25.299.6GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
25.099.6GSM10446WT 24-Hr Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
23.199.6GSM10477lec1-1 24-Hr Seed 1GSE1051Seed development in LEAFY COTYLEDON1 mutants
22.599.6GSM10478lec1-1 24-Hr Seed 2GSE1051Seed development in LEAFY COTYLEDON1 mutants
21.899.6GSM10445WT 24-Hr Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.074e-342At1g70790843416C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOC.G.S.X.
0.011e+034At4g36120829769unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVC.G.S.X.
0.021e+034At3g58830825052haloacid dehalogenase (HAD) superfamily proteinF:catalytic activity;P:unknown;C:chloroplast;BOFPC.G.S.X.
0.011e+034At3g17750821043protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytosol, plasma membrane;MOPFBVAC.G.S.X.
0.041e+034At1g66360842954C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOC.G.S.X.
0.051e+034At1g23140838922C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPFOC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.246e-652Glycine maxGma.8020.1.S1_atCA820139--8e-6At5g47710C2 domain-containing proteinC.G.S.X.
0.047e+030Hordeum vulgareEBma03_SQ003_I18_atEBma03_SQ003_I18--6e-1At2g43018CPuORF17 (Conserved peptide upstream open reading frame 17)C.G.S.X.
0.042e+034Oryza sativaOsAffx.20981.1.S1_at---0C.G.S.X.
0.226e-652Populus trichocarpaPtpAffx.100788.1.S1_a_atCK091015hypothetical protein-8e-6At5g47710C2 domain-containing proteinC.G.S.X.
0.041e+034Triticum aestivumTaAffx.108542.1.S1_atCA691321--1e+0At5g48655zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.071e-961Vitis vinifera1611449_atCD797700hypothetical protein LOC100251803-6e-9At5g47710C2 domain-containing proteinC.G.S.X.
0.031e-136Zea maysZm.17003.1.S1_atBQ619521DNA binding protein-3e-1At5g47710C2 domain-containing proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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