CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g47650

Gene name ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g47650 834816 ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2) Encodes an ADP-ribose pyrophosphatase that confers enhanced tolerance to oxidative stress. S.X. H.G.
0.51 66.3 At1g18660 838447 zinc finger (C3HC4-type RING finger) family protein F:protein binding, ATP-dependent peptidase activity, binding, zinc ion binding;P:ATP-dependent proteolysis;C:unknown;MOPFBVA S.X. H.G.
0.44 57.2 At2g35840 818157 sucrose-phosphatase 1 (SPP1) F:phosphatase activity, magnesium ion binding, sucrose-phosphatase activity, catalytic activity;P:response to cadmium ion, sucrose biosynthetic process;C:nucleus, cytoplasm;BPO S.X. H.G.
0.40 50.8 At1g05900 837100 endonuclease-related F:sequence-specific DNA binding, DNA binding, catalytic activity, endonuclease activity;P:DNA repair, base-excision repair;C:intracellular;BOAMFP S.X. H.G.
0.40 50.8 At2g16070 816104 PDV2 (PLASTID DIVISION2) An integral outer envelope membrane protein (its homolog in A thaliana PDV1), component of the plastid division machinery. Similar to ARC6, PDV2 localizes to a continuous ring at the division site in wild-type plants. PDV1 and PDV2 are required for localization of ARC5 at the chloroplast division site. S.X. H.G.
0.38 46.7 At3g13040 820490 myb family transcription factor F:transcription factor activity;P:regulation of transcription;C:unknown;PMOFBA S.X. H.G.
0.36 43.6 At4g13550 826988 triacylglycerol lipase F:triacylglycerol lipase activity;P:lipid metabolic process;C:chloroplast;POFMBV S.X. H.G.
0.35 41.6 At5g52030 835278 TraB protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOAP S.X. H.G.
0.35 41.6 At5g59400 836059 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.34 39.8 At4g33630 829504 EX1 (EXECUTER1) F:unknown;P:response to singlet oxygen;C:thylakoid membrane;MOPFBV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
51.9 99.8 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
34.4 99.7 GSM142871 GW001_ATH1_A16-Warre-2ca GSE6177 The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
32.8 99.7 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
30.6 99.7 GSM176878 AWP_AL_Txed_2 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
29.4 99.7 GSM133403 Bramke_A3-warre-S6C GSE5711 Cold induced changes: differences between the Arabidopsis thaliana wild type and freezing sensitive mutants.
26.5 99.7 GSM142865 GW001_ATH1_A10-Warre-Wca GSE6177 The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
24.4 99.6 GSM142869 GW001_ATH1_A14-Warre-3ca GSE6177 The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
23.1 99.6 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
23.0 99.6 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
22.7 99.6 E-MEXP-1443-raw-cel-1581869573
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.07 4e-4 46 At2g04440 814984 NUDIX/mutT hydrolase family protein F:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;PMOB C.G. S.X.
0.05 7e-3 42 At2g04450 814985 ATNUDT6 (Arabidopsis thaliana Nudix hydrolase homolog 6) F:ADP-ribose diphosphatase activity, hydrolase activity, NAD or NADH binding;P:response to other organism;C:cytosol;OBMPAFV C.G. S.X.
0.02 4e-1 36 At4g32290 829363 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB C.G. S.X.
0.04 4e-1 36 At4g12720 826884 NUDT7 Encodes a protein with ADP-ribose hydrolase activity. Negatively regulates EDS1-conditioned plant defense and programmed cell death. C.G. S.X.
0.06 4e-1 36 At4g25434 828648 ATNUDT10 (Arabidopsis thaliana Nudix hydrolase homolog 10) F:ADP-ribose diphosphatase activity, NAD or NADH binding, catalytic activity;P:metabolic process;C:unknown;BOMPAF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 2e-7 57 Glycine max GmaAffx.77256.1.S1_at BU577239 - - 7e-8 At4g12720 NUDT7 C.G. S.X.
0.03 3e+0 32 Hordeum vulgare EBpi01_SQ005_J09_s_at EBpi01_SQ005_J09 - - 2e-1 At2g29490 ATGSTU1 (GLUTATHIONE S-TRANSFERASE TAU 1) C.G. S.X.
0.03 2e-4 48 Oryza sativa Os06g0634300 AK070867.1 - Growth factor like protein 4e-2 At4g12720 NUDT7 C.G. S.X.
0.18 2e-7 57 Populus trichocarpa PtpAffx.203142.1.S1_at pmrna6227 hypothetical protein - 1e-7 At5g47650 ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2) C.G. S.X.
0.03 4e-1 36 Triticum aestivum TaAffx.36808.1.A1_at BJ319150 - - 1e+0 At3g24690 - C.G. S.X.
0.04 2e-6 52 Vitis vinifera 1609403_at CF205431.1 hypothetical protein LOC100257937 - 7e-6 At5g47650 ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2) C.G. S.X.
0.03 3e+0 32 Zea mays Zm.6498.1.A1_at AI691894 - - 3e-4 At1g10050 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0006979 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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