CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g47470

Gene name nodulin MtN21 family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.61 76.7 At5g47470 834797 nodulin MtN21 family protein F:unknown;P:unknown;C:membrane;BOPAM S.X. H.G.
0.75 86.9 At2g13620 815847 ATCHX15 member of Putative Na+/H+ antiporter family S.X. H.G.
0.60 75.7 At1g11250 837666 SYP125 (SYNTAXIN OF PLANTS 125) member of SYP12 Gene Family S.X. H.G.
0.53 68.6 At3g07960 819987 phosphatidylinositol-4-phosphate 5-kinase family protein F:1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding;P:phosphatidylinositol metabolic process;C:cellular_component unknown;OMBPF S.X. H.G.
0.50 65.3 At5g60740 836195 ATPase, coupled to transmembrane movement of substances F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:endomembrane system, membrane;BOMFAPV S.X. H.G.
0.29 30.3 At5g42340 834240 binding / ubiquitin-protein ligase F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;MPOFBV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
334.0 100.0 GSM142736 DH001_ATH1_A3-TCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
265.0 100.0 GSM142739 DH001_ATH1_A6-TCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
237.0 100.0 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
185.7 100.0 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
159.6 99.9 GSM239252 Columbia glabrous (C24) wild type stamen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
155.9 99.9 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
127.7 99.9 GSM131636 ATGE_73_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
120.4 99.9 E-MEXP-1138-raw-cel-1432773258
112.2 99.9 E-MEXP-285-raw-cel-440782725
111.2 99.9 E-MEXP-1138-raw-cel-1432773290
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 1e-1 38 At1g69280 843259 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFB C.G. S.X.
0.03 5e-1 36 At2g37450 818322 nodulin MtN21 family protein F:unknown;P:unknown;C:endomembrane system, membrane;PBOA C.G. S.X.
0.01 2e+0 34 At5g25910 832660 AtRLP52 (Receptor Like Protein 52) putative disease resistance protein induced by chitin oligomers. C.G. S.X.
0.01 2e+0 34 At5g03900 831927 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast envelope;BPO C.G. S.X.
0.02 2e+0 34 At4g27990 828912 YGGT family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast envelope;BOP C.G. S.X.
0.02 2e+0 34 At4g39745 830130 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMFOV C.G. S.X.
0.01 2e+0 34 At3g17750 821043 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytosol, plasma membrane;MOPFBVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e+0 34 Glycine max GmaAffx.92885.1.S1_x_at CF806050 - - 2e-1 At3g09735 DNA-binding S1FA family protein C.G. S.X.
0.02 3e-1 36 Hordeum vulgare Contig4779_s_at Contig4779 - - 2e-8 At3g53710 AGD6 C.G. S.X.
Os10g0202666 0 Os11g0419500 Oryza sativa Os04g0174500 9632.m00819 - - 9e-1 At4g14600 - C.G. S.X.
0.07 1e-2 42 Populus trichocarpa PtpAffx.156161.1.A1_at CV266435 mtn21-like protein - 4e-3 At5g47470 nodulin MtN21 family protein C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.54587.1.S1_at CA679696 - - 1e+0 At5g47470 nodulin MtN21 family protein C.G. S.X.
0.03 6e-1 34 Vitis vinifera 1608800_s_at CF209291 hypothetical protein LOC100247265 - 1e-2 At1g12100 lipid binding C.G. S.X.
0.02 4e+0 32 Zea mays ZmAffx.667.1.A1_at AI734359 tetracycline transporter protein - 3e+0 At3g42970 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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