CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g47330

Gene name palmitoyl protein thioesterase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.23 19.3 At5g47330 834780 palmitoyl protein thioesterase family protein F:palmitoyl-(protein) hydrolase activity;P:response to salt stress;C:endomembrane system;MPFO S.X. H.G.
0.29 30.3 At4g23200 828419 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:vacuole;MPOBFVA S.X. H.G.
0.25 22.6 At4g23210 828420 protein kinase family protein Encodes a Cysteine-rich receptor-like kinase (CRK13). Overexpression of CRK13 leads to hypersensitive response cell death, and induces defense against pathogens by causing increased accumulation of salicylic acid. S.X. H.G.
0.20 14.4 At4g32800 829416 AP2 domain-containing transcription factor TINY, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. S.X. H.G.
0.17 10.2 At2g43620 818964 chitinase, putative F:chitin binding, chitinase activity;P:response to salt stress;C:apoplast;PBFOVM S.X. H.G.
0.17 10.2 At5g55050 835596 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM S.X. H.G.
0.14 6.8 At3g47380 823892 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
168.5 100.0 GSM311296 Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
151.9 99.9 GSM131109 AtGen_B-37_3-2-4_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
151.5 99.9 GSM131114 AtGen_B-42_3-7-4_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
128.8 99.9 GSM131110 AtGen_B-38_3-3-4_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
113.8 99.9 GSM142854 MG001_ATH1_A7-Torres-3N1 GSE6176 Impact of Type III effectors on plant defense responses
112.0 99.9 GSM131150 AtGen_B-36_3-1-4_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
108.5 99.9 GSM311295 Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
106.1 99.9 GSM131137 AtGen_B-23_2-2-4_REP2_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
99.2 99.9 GSM131113 AtGen_B-41_3-6-4_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
78.7 99.9 GSM131142 AtGen_B-28_2-7-4_REP2_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.85 5e-161 567 At5g47340 834781 palmitoyl protein thioesterase family protein F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO C.G. S.X.
0.78 2e-95 349 At5g47350 834782 palmitoyl protein thioesterase family protein F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO C.G. S.X.
0.29 1e-23 111 At4g17480 827459 palmitoyl protein thioesterase family protein F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO C.G. S.X.
0.32 9e-18 91 At4g17483 827461 palmitoyl protein thioesterase family protein F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO C.G. S.X.
0.11 2e-15 83 At4g17470 827458 palmitoyl protein thioesterase family protein F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO C.G. S.X.
0.12 1e-1 38 At3g60340 825205 palmitoyl protein thioesterase family protein F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:vacuole;MPFO C.G. S.X.
0.01 2e+0 34 At5g38730 833864 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA C.G. S.X.
0.01 2e+0 34 At5g04810 830360 pentatricopeptide (PPR) repeat-containing protein F:nucleotide binding, nucleic acid binding;P:unknown;C:chloroplast;PMOFBVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 2e-10 67 Glycine max Gma.4059.1.S1_at AI960118 - - 8e-4 At3g60340 palmitoyl protein thioesterase family protein C.G. S.X.
0.06 4e-3 42 Hordeum vulgare Contig5918_at Contig5918 - - 9e-6 At3g60340 palmitoyl protein thioesterase family protein C.G. S.X.
0.07 4e-3 44 Oryza sativa Os10g0563000 AK072479.1 - Palmitoyl protein thioesterase family protein 1e-2 At3g60340 palmitoyl protein thioesterase family protein C.G. S.X.
0.07 1e-5 52 Populus trichocarpa PtpAffx.145921.1.S1_at CV282466 hypothetical protein - 3e-15 At3g60340 palmitoyl protein thioesterase family protein C.G. S.X.
0.08 8e-3 42 Triticum aestivum Ta.14119.2.S1_a_at CA653400 - - 4e-3 At5g47330 palmitoyl protein thioesterase family protein C.G. S.X.
0.07 4e-8 57 Vitis vinifera 1620056_s_at CB008823 hypothetical protein LOC100249424 - 2e-15 At3g60340 palmitoyl protein thioesterase family protein C.G. S.X.
0.08 2e-1 36 Zea mays Zm.18316.1.S1_at CO521275 hypothetical protein LOC100216902 - 6e-1 At5g47330 palmitoyl protein thioesterase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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