Gene omics information

Query gene ID At5g47080
Gene name CKB1
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g47080834754CKB1Regulatory subunit beta of casein kinase II. purified CKB1 resulted in up 100-fold stimulation of casein kinase activity compared with the CKA1 activity alone. Forms a tetrameric complex with CKA1 (CKA1(2)CKB1(2)).S.X.H.G.
0.4355.3At2g32600817820hydroxyproline-rich glycoprotein family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:nucleus, intracellular, spliceosome;MPOFBVAS.X.H.G.
0.3948.4At1g49590841383formin-binding protein-relatedF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:nucleus;MPFOS.X.H.G.
0.3643.6At5g50320835098ELO3 (ELONGATA 3)A subunit of Elongator, a histone acetyl transferase complex, consisting of six subunits (ELP1–ELP6), that copurifies with the elongating RNAPII in yeast and humans. Three Arabidopsis thaliana genes, encoding homologs of the yeast Elongator subunits ELP1, ELP3 (histone acetyl transferase), and ELP4 are responsible for the narrow leaf phenotype in elongata mutants and for reduced root growth that results from a decreased cell division rate. Two lines with RNAi constructs directed against HAG3 grow normally and can produce root calli, but have defects in agrobacterium-mediated transformation.S.X.H.G.
0.3643.6At4g00830827998RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFPBVAS.X.H.G.
0.3643.6At3g60250825196CKB3Regulatory (beta) subunit of the protein kinase CK2. Involved in regulation of the circadian clock in ArabidopsisS.X.H.G.
0.3338.1At1g14510838013AL7 (ALFIN-LIKE 7)AL7 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.S.X.H.G.
0.3235.7At5g06140830501SNX1 (SORTING NEXIN 1)Homolog of yeast retromer subunit VPS5. Part of a retromer-like protein complex involved in endosome to lysosome protein transport. In roots it co-localizes with the PIN2 auxin efflux carrier. Involved in endocytic sorting of membrane proteins including PIN2, BOR1 and BRI1.S.X.H.G.
0.3235.7At3g05530819718RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A)Encodes RPT5a (Regulatory Particle 5a), one of the six AAA-ATPases of the proteasome regulatory particle. Essential for gametophyte development. In Arabidopsis, the RPT5 subunit is encoded by two highly homologous genes, RPT5a and RPT5b. RPT5a and RPT5b show accession-dependent functional redundancy. In Wassilewskija (Ws) accession: mutant alleles of RPT5a displayed 50% pollen lethality, indicating that RPT5a is essential for male gametophyte development. In the Columbia (Col) accession, a rpt5a mutant allele did not display such a phenotype because the RPT5b Col allele complements the rpt5a defect in the male gametophyte, whereas the RPT5b Ws allele does not. Double rpt5a rpt5b mutants in Col background showed a complete male and female gametophyte lethal phenotype.S.X.H.G.
0.3133.8At3g59990825169MAP2B (METHIONINE AMINOPEPTIDASE 2B)Encodes a MAP2 like methionine aminopeptidaseS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
59.599.8GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibition
26.099.7GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibition
15.499.5GSM133945Murray_2-1_T0-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
15.399.4GSM142902WW001_ATH1_A1-WILLA-CONGSE6181Assembly of the cell wall pectic matrix.
15.199.4GSM133117RIKEN-YAMAUCHI1AGSE5687AtGenExpress: Different temperature treatment of seeds
14.599.4E-ATMX-31-raw-cel-1516947984
14.099.4GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
13.899.4E-MEXP-739-raw-cel-1099467384
13.299.4GSM133310RIKEN-NAKABAYASHI5BGSE5700AtGenExpress: Effect of ABA during seed imbibition
12.999.3GSM133309RIKEN-NAKABAYASHI4BGSE5700AtGenExpress: Effect of ABA during seed imbibition
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.636e-173607At4g17640827484CKB2Encodes casein kinase II beta (regulatory) subunit.C.G.S.X.
0.481e-50200At2g44680819076CKB4 (CASEIN KINASE II BETA SUBUNIT 4)Encodes casein kinase II beta chain, a CK2 regulatory subunit. Nuclear-localized CKB4 protein exists in vivo as different isoforms, resulting from phosphorylation on serine residues. The phosphorylated isoforms are the preferred substrate for ubiquitination and degradation by the proteasome pathway. Involved in regulation of circadian clock.C.G.S.X.
0.504e-38159At3g60250825196CKB3Regulatory (beta) subunit of the protein kinase CK2. Involved in regulation of the circadian clock in ArabidopsisC.G.S.X.
0.012e-344At1g35530840448DEAD/DEAH box helicase, putativeF:in 6 functions;P:unknown;C:cellular_component unknown;BOMFPAVC.G.S.X.
0.052e-344At1g36020840505-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.463e-58226Glycine maxGma.5686.1.S1_atCA935460--3e-58At5g47080CKB1C.G.S.X.
0.389e-44176Hordeum vulgareContig9028_atContig9028--5e-45At2g44680CKB4 (CASEIN KINASE II BETA SUBUNIT 4)C.G.S.X.
0.374e-83309Oryza sativaOs07g0495100AK121850.1-Possible protein kinase CK2 regulatory subunit(Fragment)4e-83At5g47080CKB1C.G.S.X.
0.511e-88327Populus trichocarpaPtpAffx.34708.1.S1_s_atCV283287hypothetical protein-1e-88At5g47080CKB1C.G.S.X.
0.411e-78293Triticum aestivumTa.10124.1.S1_atBJ218430--2e-78At5g47080CKB1C.G.S.X.
0.413e-45180Vitis vinifera1612977_atCF204464.1hypothetical protein LOC100266745-5e-53At3g60250CKB3C.G.S.X.
0.386e-57220Zea maysZm.1906.1.S1_atAF239818.1protein kinase CK2 regulatory subunit CK2B3-4e-33At3g60250CKB3C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0006468The process of introducing a phosphate group on to a protein.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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