CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g46890

Gene name protease inhibitor/seed storage/lipid transfer protein (LTP) family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.63 78.1 At5g46890 834734 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P S.X. H.G.
0.73 85.5 At4g11210 826723 disease resistance-responsive family protein / dirigent family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P S.X. H.G.
0.73 85.5 At4g26320 828738 AGP13 (arabinogalactan protein 13) F:unknown;P:unknown;C:anchored to membrane;P S.X. H.G.
0.67 81.6 At5g56540 835755 AGP14 (ARABINOGALACTAN PROTEIN 14) Encodes arabinogalactan protein (AGP14). S.X. H.G.
0.40 50.8 At3g05920 819761 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PMOBVFA S.X. H.G.
0.33 38.1 At4g12510 826863 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
87.4 99.9 GSM226538 L8SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
77.5 99.9 GSM133985 Birnbaum_1-15_StageIII-4_Rep4_ATH1 GSE5749 A gene expression map of the Arabidopsis root
76.1 99.9 GSM226537 L7SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
74.0 99.9 GSM226548 Slice6JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
70.2 99.9 GSM133984 Birnbaum_1-14_StageIII-3_Rep3_ATH1 GSE5749 A gene expression map of the Arabidopsis root
64.8 99.8 GSM226536 L6SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
43.9 99.8 GSM226549 Slice7JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
38.1 99.8 GSM265414 Arabidopsis, root cells, -Fe, replicate 1 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
36.9 99.7 GSM226539 L9SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
31.5 99.7 GSM184477 Lateral Root Cap root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.97 0 682 At5g46900 834735 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P C.G. S.X.
0.14 3e-12 71 At4g22460 828341 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P C.G. S.X.
0.10 3e-9 61 At4g12480 826860 pEARLI 1 a putative lipid transfer protein, vernalization-responsive and cold-induced C.G. S.X.
0.14 1e-8 59 At4g12500 826862 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:unknown;POBMVFA C.G. S.X.
0.11 5e-8 57 At4g12470 826859 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:defense response to fungus, lipid transport;C:endomembrane system;PBOVMFA C.G. S.X.
0.13 3e-6 52 At4g12490 826861 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:defense response to fungus, lipid transport;C:unknown;PBOMVFA C.G. S.X.
0.18 3e-6 52 At4g12510 826863 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P C.G. S.X.
0.18 3e-6 52 At4g12520 826864 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P C.G. S.X.
0.07 3e-3 42 At4g12550 826868 AIR1 isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein that is related to a large family of proteins that consist of a proline-rich or glycine-rich N-terminus and a hydrophobic, possibly membrane spanning C-terminus. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 2e-8 59 Glycine max Gma.6146.1.S1_at BI969869 - - 3e-8 At5g46890 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.03 6e+0 30 Hordeum vulgare Contig553_s_at Contig553 - - 4e+0 At1g26340 CB5-A (CYTOCHROME B5 ISOFORM A) C.G. S.X.
Os11g0150000 0.05 6e+0 Oryza sativa Os07g0109000 NM_186158.1 - - 4e+0 At5g26950 AGL93 C.G. S.X.
0.05 2e-2 40 Populus trichocarpa Ptp.6981.1.S1_at DN488994 - - 9e-2 At4g00165 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.04 8e-1 34 Triticum aestivum TaAffx.84915.1.S1_at CA627255 - - 1e+0 At5g46890 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.07 1e-5 48 Vitis vinifera 1619613_at CD801720 hypothetical protein LOC100267804 - 5e-7 At2g45180 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.04 5e+0 30 Zea mays Zm.6908.1.A1_at AI065637 - - 2e-1 At1g25370 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006869 The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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