Gene omics information

Query gene ID At5g46880
Gene name HB-7 (HOMEOBOX-7)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4457.2At5g46880834733HB-7 (HOMEOBOX-7)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MPFOBS.X.H.G.
0.4457.2At1g17920838371HDG12 (HOMEODOMAIN GLABROUS 12)Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Together with HDG11, it is involved in trichome branching.S.X.H.G.
0.4355.3At1g73360843671HDG11 (HOMEODOMAIN GLABROUS 11)Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. It is involved in trichome branching.S.X.H.G.
0.051.1At1g15570838127CYCA2A2-type cyclin. Negatively regulates endocycles and acts as a key regulator of ploidy levels in Arabidopsis endoreduplication. Interacts physically with CDKA;1. Expressed preferentially in trichomes and young developing tissues.S.X.H.G.
0.051.1At2g46380819246unknown proteinF:unknown;P:unknown;C:cellular_component unknown;POMBS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
421.1100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
84.199.9GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
79.099.9GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
71.899.9GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
70.499.9GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
68.699.9GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
65.899.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
63.999.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
63.399.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
63.299.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.204e-28127At4g17710827492HDG4 (HOMEODOMAIN GLABROUS 4)Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.C.G.S.X.
0.049e-859At4g21750828263ATML1 (MERISTEM LAYER 1)Encodes a homeobox protein similar to GL2. It is expressed in both the apical and basal daughter cells of the zygote as well as their progeny. Expression is detected starting the two-celled stage of embryo development and is later restricted to the outermost, epidermal cell layer from its inception. Its promoter is highly modular with each region contributing to specific aspects of the gene's spatial and temporal expression. Double mutant analysis with PDF2, another L1-specific gene, suggests that their functions are partially redundant and the absence of both of the genes result in abnormal shoot development.C.G.S.X.
0.021e-656At1g17920838371HDG12 (HOMEODOMAIN GLABROUS 12)Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Together with HDG11, it is involved in trichome branching.C.G.S.X.
0.023e-448At1g73360843671HDG11 (HOMEODOMAIN GLABROUS 11)Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. It is involved in trichome branching.C.G.S.X.
0.032e-242At4g00730828022ANL2 (ANTHOCYANINLESS 2)Encodes a homeodomain protein of the HD-GLABRA2 group. Involved in the accumulation of anthocyanin and in root developmentC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.041e-450Glycine maxGmaAffx.42464.1.S1_atBM893519--5e-2At4g17710HDG4 (HOMEODOMAIN GLABROUS 4)C.G.S.X.
0.012e-344Hordeum vulgareContig4557_atContig4557--9e-2At1g15340MBD10C.G.S.X.
0.047e-757Oryza sativaOs10g0575600AB101646.1-Homeobox domain containing protein5e-7At5g46880HB-7 (HOMEOBOX-7)C.G.S.X.
0.162e-34149Populus trichocarpaPtpAffx.220072.1.S1_atpmrna36369hypothetical protein-1e-34At5g46880HB-7 (HOMEOBOX-7)C.G.S.X.
0.053e-448Triticum aestivumTaAffx.52771.1.S1_atCA701787--7e-5At5g46880HB-7 (HOMEOBOX-7)C.G.S.X.
0.062e-859Vitis vinifera1607988_atCF209064hypothetical protein LOC100253940-2e-8At5g46880HB-7 (HOMEOBOX-7)C.G.S.X.
0.046e-756Zea maysZm.344.1.A1_atAI834592OCL4 protein-2e-6At5g46880HB-7 (HOMEOBOX-7)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006355Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
LGO:0045449Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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