Gene omics information

Query gene ID At5g46640
Gene name DNA-binding family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2624.4At5g46640834707DNA-binding family proteinF:DNA binding;P:unknown;C:unknown;PBMOFS.X.H.G.
0.7586.9At5g61190836240zinc finger protein-relatedF:zinc ion binding, nucleic acid binding;P:unknown;C:chloroplast;MOPFBAVS.X.H.G.
0.6781.6At1g15910838161XH/XS domain-containing protein / XS zinc finger domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVS.X.H.G.
0.6781.6At3g48670824027XH/XS domain-containing protein / XS zinc finger domain-containing proteinF:molecular_function unknown;P:response to cadmium ion;C:cellular_component unknown;MOBFPAVS.X.H.G.
0.103.4At4g29940829117PRHA (PATHOGENESIS RELATED HOMEODOMAIN PROTEIN A)Homeodomain protein (PRHA). Expression of the gene differs in various vegetative and floral plant tissues and is positively influenced by the phytohormone auxin. It is often associated with regions of developing vascular tissue. The prha promoter is highly responsive to the synthetic auxin, naphthalene acetic acid, in transient assays using tobacco protoplasts. The PRHA protein has the capacity to bind to TAATTG core sequence elements but requires additional adjacent bases for high-affinity binding.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
308.8100.0GSM284385Arabidopsis GEP6GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
215.8100.0GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
202.3100.0GSM133758Lindsey_1-11_heart-stage-root_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
167.3100.0GSM284387Arabidopsis GSUS4bGSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
165.2100.0GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
161.699.9GSM284386Arabidopsis GSUS3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
143.999.9GSM133778Lindsey_1-2_globular-apical_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
137.799.9GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
111.599.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
106.199.9GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.358e-28125At4g17950827520DNA-binding family proteinF:DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;OMFPBVC.G.S.X.
0.056e-446At4g25320828635DNA-binding protein-relatedF:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMC.G.S.X.
0.012e-344At1g25540839141PFT1 (PHYTOCHROME AND FLOWERING TIME 1)Encodes a nuclear protein that acts in a phyB pathway (but downstream of phyB) and induces flowering in response to suboptimal light conditions. Mutants are hypo-responsive to far-red and hyper-responsive to red light and flower late under long day conditions.C.G.S.X.
0.029e-342At3g14100820626oligouridylate-binding protein, putativeF:mRNA 3'-UTR binding;P:unknown;C:unknown;MPFOBC.G.S.X.
0.029e-342At1g28310839725Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PMOBFC.G.S.X.
0.024e-240At3g45150823651TCP16 (TCP domain protein 16)F:transcription factor activity;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.021e-138At3g03460821252unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e-138Glycine maxGmaAffx.70374.1.S1_atCA935398--3e-4At2g36985ROT4 (ROTUNDIFOLIA4)C.G.S.X.
0.033e-136Hordeum vulgareHY03L11u_atHY03L11u--9e-1At2g28820-C.G.S.X.
0.033e-448Oryza sativaOs02g0824300AK066031.1-HMG-I and HMG-Y, DNA-binding domain containingprotein3e-4At5g46640DNA-binding family proteinC.G.S.X.
0.151e-1585Populus trichocarpaPtp.262.2.S1_atCK087794--5e-16At5g46640DNA-binding family proteinC.G.S.X.
0.026e-136Triticum aestivumTaAffx.79383.1.S1_atCA716967--6e-2At1g49010myb family transcription factorC.G.S.X.
0.022e-136Vitis vinifera1609770_atCF510595hypothetical protein LOC100244598-2e-1At4g34590GBF6 (G-BOX BINDING FACTOR 6)C.G.S.X.
0.052e-240Zea maysZm.14759.1.S1_atCB280800hypothetical protein LOC100191677-4e-2At5g46640DNA-binding family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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