Gene omics information

Query gene ID At5g46330
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2319.3At5g46330834676FLS2 (FLAGELLIN-SENSITIVE 2)Encodes a leucine-rich repeat serine/threonine protein kinase that is expressed ubiquitously. FLS2 is involved in MAP kinase signalling relay involved in innate immunity. Essential in the perception of flagellin, a potent elicitor of the defense response. FLS2 is directed for degradation by the bacterial ubiquitin ligase AvrPtoB.S.X.H.G.
0.135.8At3g62150825388PGP21 (P-GLYCOPROTEIN 21)F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:plasma membrane;BOMAFPVS.X.H.G.
0.114.1At1g61380842432SD1-29 (S-DOMAIN-1 29)F:carbohydrate binding, protein kinase activity, kinase activity;P:protein amino acid autophosphorylation;C:endomembrane system;MPOBFVAS.X.H.G.
0.092.8At5g20480832170EFR (EF-TU RECEPTOR)Encodes a predicted leucine-rich repeat receptor kinase (LRR-RLK). Functions as the receptor for bacterial PAMP (pathogen associated molecular patterns) EF-Tu.S.X.H.G.
0.071.9At5g61560836277protein kinase family proteinF:in 6 functions;P:protein amino acid phosphorylation, protein ubiquitination;C:chloroplast, plasma membrane;MPOBFVAS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
47.799.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
41.499.8GSM131120AtGen_B-6_1-6-1_REP_1_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.011e-450At2g33170817878leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAC.G.S.X.
0.015e-448At5g25930832662leucine-rich repeat family protein / protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, membrane;MPOBFVAC.G.S.X.
0.012e-346At4g08850826456kinaseF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, membrane;MPOBFVAC.G.S.X.
0.017e-344At5g07280830619EMS1 (EXCESS MICROSPOROCYTES1)Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene's promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression. ems1 mutants lack the tapetum. Acts as regulator of anther cell differentiationC.G.S.X.
0.017e-344At1g74170843757AtRLP13 (Receptor Like Protein 13)F:protein binding;P:signal transduction;C:unknown;PMOBFAVC.G.S.X.
0.013e-242At4g34440829595protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MOPBFVAC.G.S.X.
0.013e-242At3g49350824097RAB GTPase activatorF:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular, chloroplast;MFOPC.G.S.X.
0.013e-242At1g74190843759AtRLP15 (Receptor Like Protein 15)F:protein binding;P:signal transduction;C:endomembrane system;PMOBFAVC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.022e-450Glycine maxGma.4734.1.S1_atAW310199--2e-22At1g66150TMK1 (TRANSMEMBRANE KINASE 1)C.G.S.X.
0.016e-240Hordeum vulgareContig6203_atContig6203--1e-3At1g70110lectin protein kinase family proteinC.G.S.X.
0.011e-244Oryza sativaOs03g0717000AK066295.1-TMK protein precursor6e-6At2g01820leucine-rich repeat protein kinase, putativeC.G.S.X.
0.023e-656Populus trichocarpaPtpAffx.215196.1.S1_atpmrna29245hypothetical protein-2e-1At2g31460unknown proteinC.G.S.X.
0.023e-242Triticum aestivumTa.29629.2.S1_a_atCA608706--3e-7At1g24650leucine-rich repeat family protein / protein kinase family proteinC.G.S.X.
0.015e-136Vitis vinifera1616577_atBQ792277hypothetical protein LOC100261345-6e+0At3g54620BZIP25 (BASIC LEUCINE ZIPPER 25)C.G.S.X.
0.015e-240Zea maysZm.16346.1.A1_atAY108153.1hypothetical protein LOC100191168 /// 40S ribosomal protein S30-2e-8At4g2939040S ribosomal protein S30 (RPS30B)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0042742Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
XGO:0052544Any process by which callose is transported to, and/or maintained in, the cell wall during the defense response. Callose is a linear 1,3-beta-d-glucan formed from UDP-glucose and is found in certain plant cell walls.
XGO:0016045The series of events in which a stimulus from a bacterium is received and converted into a molecular signal.
CGO:0006468The process of introducing a phosphate group on to a protein.
CGO:0007169The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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