CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g46200

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.86 93.1 At5g46200 834662 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PF S.X. H.G.
0.56 73.0 At1g52570 841689 PLDALPHA2 (phosphlipase d alpha 2) member of C2-PLD subfamily S.X. H.G.
0.52 67.4 At4g01470 828051 TIP1 Encodes AtTIP1;3, functions as water and urea channels in pollen. S.X. H.G.
0.45 58.3 At5g44300 834453 dormancy/auxin associated family protein F:molecular_function unknown;P:unknown;C:unknown;P S.X. H.G.
0.40 50.8 At1g52680 841700 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.33 38.1 At5g14670 831319 ATARFA1B (ADP-ribosylation factor A1B) A member of ARF GTPase family. Arabidopsis has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor DcARF1 (GI:965483) (Daucus carota), other ARFs and ARF-like proteins. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct. S.X. H.G.
0.32 35.7 At1g26480 839189 GRF12 (GENERAL REGULATORY FACTOR 12) 14-3-3 protein GF14iota (grf12) S.X. H.G.
0.30 32.1 At2g30290 817579 vacuolar sorting receptor, putative F:calcium ion binding;P:protein targeting to vacuole;C:integral to plasma membrane, Golgi transport complex;MOPBA S.X. H.G.
0.29 30.3 At3g46750 823828 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA S.X. H.G.
0.27 26.2 At4g29340 829055 PRF4 (PROFILIN 4) Profilin is a low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton in eukaryotes, including higher plants. PRF4 and PRF5 are late pollen-specific and are not detectable in other cell types of the plant body including microspores and root hairs. Immunocytochemical studies at the subcellular level reveal that both the constitutive and pollen-specific profilins are abundant in the cytoplasm. In vegetative cell types, such as root apical cells, profilins showed localization to nuclei in addition to the cytoplasmic staining. S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
475.4 100.0 GSM154508 Arabidopsis growing pollen tubes rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
336.1 100.0 GSM154507 Arabidopsis growing pollen tubes rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
285.4 100.0 GSM142736 DH001_ATH1_A3-TCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
237.2 100.0 GSM142739 DH001_ATH1_A6-TCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
190.3 100.0 GSM106913 opr3_JA_8 hrs_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
173.3 100.0 GSM106969 opr3_OPDA_22 hrs_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
136.3 99.9 GSM106967 opr3_OPDA_22 hrs_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
131.6 99.9 GSM106923 opr3_OPDA_2 hrs_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
127.7 99.9 GSM106912 opr3_JA 8hrs_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
122.4 99.9 GSM106973 ws_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.24 4e-14 79 At4g17860 827509 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PF C.G. S.X.
0.01 6e-4 46 At4g23130 828412 CRK5 (CYSTEINE-RICH RLK5) Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) C.G. S.X.
0.02 2e-1 38 At5g46820 834726 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFB C.G. S.X.
0.02 6e-1 36 At2g30810 817632 gibberellin-regulated family protein F:unknown;P:response to gibberellin stimulus;C:endomembrane system;P C.G. S.X.
0.01 6e-1 36 At2g12190 815688 cytochrome P450, putative F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:unknown;MPFBOAV C.G. S.X.
0.01 6e-1 36 At1g64950 842803 CYP89A5 member of CYP89A C.G. S.X.
0.01 2e+0 34 At4g20040 827749 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPO C.G. S.X.
0.01 2e+0 34 At3g60850 825256 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e+0 34 Glycine max GmaAffx.88168.1.S1_at CA784270 - - 3e+0 At3g46613 RTFL4 (ROTUNDIFOLIA LIKE 4) C.G. S.X.
0.02 5e+0 32 Hordeum vulgare HS05M19u_s_at HS05M19u - - 4e+0 At3g04540 - C.G. S.X.
0.02 3e-1 38 Oryza sativa Os04g0187800 9632.m00967 - Conserved hypothetical protein 3e+0 At5g37290 armadillo/beta-catenin repeat family protein C.G. S.X.
0.02 3e+0 34 Populus trichocarpa PtpAffx.14538.2.A1_at DN492364 - - 2e+1 Atcg01080 - C.G. S.X.
0.03 4e-2 40 Triticum aestivum TaAffx.9510.1.S1_at CA596520 - - 3e-1 At4g20300 unknown protein C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1618958_at AY427138.1 - - 3e-1 At4g00680 ADF8 (ACTIN DEPOLYMERIZING FACTOR 8) C.G. S.X.
0.02 4e+0 32 Zea mays Zm.4505.1.A1_a_at AY111153.1 cation cation antiporter - 1e+0 At1g54110 cation exchanger, putative (CAX10) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage