CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g46110

Gene name APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g46110 834652 APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2) mutant has Altered acclimation responses; Chloroplast Triose Phosphate Translocator S.X. H.G.
0.92 96.0 At5g66570 836789 PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1) Encodes a protein which is an extrinsic subunit of photosystem II and which has been proposed to play a central role in stabilization of the catalytic manganese cluster. In Arabidopsis thaliana the PsbO proteins are encoded by two genes: psbO1 and psbO2. PsbO1 is the major isoform in the wild-type. S.X. H.G.
0.92 96.0 At4g02770 828183 PSAD-1 (photosystem I subunit D-1) Encodes a protein predicted by sequence similarity with spinach PsaD to be photosystem I reaction center subunit II (PsaD1) S.X. H.G.
0.92 96.0 At5g01530 830325 chlorophyll A-B binding protein CP29 (LHCB4) F:chlorophyll binding;P:response to blue light, response to red light, response to far red light, photosynthesis;C:in 6 components;POM S.X. H.G.
0.91 95.6 At4g12800 826892 PSAL (photosystem I subunit L) Encodes subunit L of photosystem I reaction center. S.X. H.G.
0.91 95.6 At1g31330 840021 PSAF (photosystem I subunit F) Encodes subunit F of photosystem I. S.X. H.G.
0.90 95.1 At4g05180 825866 PSBQ-2 Encodes the PsbQ subunit of the oxygen evolving complex of photosystem II. S.X. H.G.
0.90 95.1 At3g16140 820859 PSAH-1 (photosystem I subunit H-1) Encodes subunit H of photosystem I reaction center subunit VI. S.X. H.G.
0.89 94.6 At1g06680 837178 PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1) Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution. S.X. H.G.
0.88 94.0 At1g08380 837358 PSAO (photosystem I subunit O) Encodes subunit O of photosystem I. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.6 97.9 E-MEXP-1454-raw-cel-1585857887
4.3 97.7 E-MEXP-1454-raw-cel-1585858217
4.1 97.6 E-TABM-62-raw-cel-720981378
3.9 97.4 GSM128688 Helenius_1-1_control-non-treated_Rep1_ATH1 GSE5521 Comparative ABA-treatment of Col-O vector control and transgenic plants
3.8 97.3 E-MEXP-1454-raw-cel-1585858254
3.8 97.3 GSM38668 NSNP GSE2268 Arabidopsis polysome microarray
3.8 97.3 E-MEXP-1454-raw-cel-1585858545
3.7 97.2 E-MEXP-1454-raw-cel-1585858291
3.7 97.2 E-MEXP-1454-raw-cel-1585858437
3.7 97.2 E-TABM-62-raw-cel-720981793
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 2e-1 38 At5g57450 835850 XRCC3 Involved in homologous recombination and recombinational repair, mutants are sterile, hypersensitive to DNA crosslinking agents, show aberrant meiosis with extensive chromosome fragmentation C.G. S.X.
0.01 2e-1 38 At5g01400 831597 ESP4 (ENHANCED SILENCING PHENOTYPE 4) Encodes a Symplekin/Pta1 homologue which would have the potential to interact with either ESP1 or AtCstF64. C.G. S.X.
0.02 2e-1 38 At4g28190 828934 ULT1 (ULTRAPETALA1) Encodes a novel Cys-rich protein with a B-box like domain that acts as a negative regulator of meristem cell accumulation in inflorescence and floral meristems as loss-of-function ult1 mutations cause inflorescence meristem enlargement, the production of extra flowers and floral organs, and a decrease in floral meristem determinacy. C.G. S.X.
0.01 6e-1 36 At5g08230 830719 PWWP domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.02 6e-1 36 At4g12000 826807 - F:unknown;P:response to oxidative stress;C:unknown;BOPMFA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.37 2e-94 347 Glycine max Gma.11183.1.S1_at CD396098 Putative plastid triose phophate translocator mRNA, partial cds; nuclear gene for plastid product - 2e-88 At5g46110 APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2) C.G. S.X.
0.18 2e-20 99 Hordeum vulgare Contig3114_at Contig3114 - - 5e-18 At5g46110 APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2) C.G. S.X.
0.26 6e-24 113 Oryza sativa Os01g0239200 BX900663 - Triose phosphate/phosphate translocator 3e-25 At5g46110 APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2) C.G. S.X.
0.46 1e-110 400 Populus trichocarpa PtpAffx.381.1.S1_a_at BP934501 hypothetical protein - 3e-105 At5g46110 APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2) C.G. S.X.
0.23 9e-25 115 Triticum aestivum TaAffx.122974.1.S1_at CA660914 - - 9e-15 At5g46110 APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2) C.G. S.X.
0.54 3e-102 371 Vitis vinifera 1620461_at CA818763 hypothetical protein LOC100257292 - 2e-96 At5g46110 APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2) C.G. S.X.
0.21 3e-22 105 Zea mays Zm.150.1.A1_a_at AY103868.1 triose phosphate/phosphate translocator - 1e-21 At5g46110 APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0015717 The directed movement of triose phosphate into, out of, within or between cells.
L GO:0006810 The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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