CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g46050

Gene name PTR3 (PEPTIDE TRANSPORTER 3)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.31 33.8 At5g46050 834646 PTR3 (PEPTIDE TRANSPORTER 3) Encodes a di- and tri-peptide transporter involved in responses to wounding, virulent bacterial pathogens, and high NaCl concentrations. The protein is predicted to have 12 transmembrane helicies. S.X. H.G.
0.75 86.9 At3g18250 821353 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMFO S.X. H.G.
0.67 81.6 At3g13950 820608 unknown protein F:molecular_function unknown;P:unknown;C:unknown;P S.X. H.G.
0.67 81.6 At5g38900 833882 DSBA oxidoreductase family protein F:protein disulfide oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;BOFPMA S.X. H.G.
0.35 41.6 At3g47480 823902 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:endomembrane system;MPFOB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
69.9 99.9 GSM128673 Underwood_1-25_hrpA-10e8-7h_Rep1_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
63.6 99.8 GSM128672 Underwood_1-27_hrpA-10e8-7h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
63.4 99.8 GSM142831 GM001_ATH1_A30-Torres-9N6_repeat1 GSE6176 Impact of Type III effectors on plant defense responses
61.6 99.8 GSM128686 Underwood_1-39_E.coli-TUV86-2-fliC-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
61.4 99.8 GSM128664 Underwood_1-18_Cor-hrpS-5x10e7-10h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
59.0 99.8 GSM128687 Underwood_1-40_E.coli-TUV86-2-fliC-10e8-7h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
57.8 99.8 GSM142848 MG001_ATH1_A29-Torres-9N3 GSE6176 Impact of Type III effectors on plant defense responses
55.0 99.8 GSM128682 Underwood_1-35_E.coli-0157-H7-10e8-7h_Rep1_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
53.6 99.8 E-MEXP-173-raw-cel-357965520
52.7 99.8 GSM128674 Underwood_1-26_hrpA-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.69 0 757 At5g46040 834645 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport, response to nematode;C:membrane;BPMOF C.G. S.X.
0.04 4e-3 44 At2g40460 818640 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport, response to nematode;C:membrane;BPMOF C.G. S.X.
0.01 6e-2 40 At3g54140 824581 PTR1 (PEPTIDE TRANSPORTER 1) Encodes a di- and tri-peptide transporter that recognizes a variety of different amino acid combinations. GFP-tagged PTR1 localizes to the plasma membrane and has 8 to 11 predicted transmembrane domains. PTR1 is expressed in a number of different vascular tissues throughout the plant based on promoter:GUS expression analysis. ptr1 mutants have a lower dry weight than wild type plants when both are grown with Pro-Ala or Ala-Ala dipeptides as their nitrogen source, suggesting that PTR1 plays a role in dipeptide uptake in the roots. Furthermore N content of ptr1 mutants is lower than that of wild type plants when grown with Pro-Ala or a mixture of dipeptides as nitrogen source C.G. S.X.
0.01 6e-2 40 At1g72130 843544 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;BPOMF C.G. S.X.
0.01 2e-1 38 At4g11160 826717 translation initiation factor IF-2, mitochondrial, putative F:GTP binding, GTPase activity, translation initiation factor activity;P:translational initiation;C:intracellular;BOMFAP C.G. S.X.
0.01 2e-1 38 At3g25280 822122 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;PBMFO C.G. S.X.
0.01 2e-1 38 At2g36430 818217 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 9e-1 36 At5g28470 832936 transporter F:transporter activity;P:oligopeptide transport;C:membrane;PMBFO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 5e-9 63 Glycine max Gma.5961.1.S1_at AB052786.1 NRT1-3 protein - 5e-9 At5g46050 PTR3 (PEPTIDE TRANSPORTER 3) C.G. S.X.
0.03 2e+0 34 Hordeum vulgare Contig21643_at Contig21643 - - 4e-4 At1g68570 proton-dependent oligopeptide transport (POT) family protein C.G. S.X.
0.05 2e-9 65 Oryza sativa Os10g0470700 AK101055.1 - Peptide transporter 1e-9 At5g46050 PTR3 (PEPTIDE TRANSPORTER 3) C.G. S.X.
0.27 4e-13 77 Populus trichocarpa PtpAffx.208208.1.S1_at pmrna16332 hypothetical protein - 2e-13 At5g46050 PTR3 (PEPTIDE TRANSPORTER 3) C.G. S.X.
0.04 4e-6 54 Triticum aestivum Ta.8453.1.S1_at CA666696 - - 5e-6 At5g46050 PTR3 (PEPTIDE TRANSPORTER 3) C.G. S.X.
0.03 3e-1 36 Vitis vinifera 1618261_at CF403474 hypothetical protein LOC100250961 - 2e-2 At1g68570 proton-dependent oligopeptide transport (POT) family protein C.G. S.X.
0.02 2e+0 34 Zea mays Zm.6759.1.A1_at CD974454 peptide transporter PTR2 - 2e+0 At5g46050 PTR3 (PEPTIDE TRANSPORTER 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0080052 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a histidine stimulus.
X GO:0080053 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a phenylalanine stimulus.
X GO:0009611 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism.
X GO:0009737 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.
X GO:0009751 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a salicylic acid stimulus.
X GO:0009753 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus.
X GO:0042538 A change in state or activity of a cell or an organism or cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, an increase in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
X GO:0042742 Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
X GO:0042938 The directed movement of a dipeptide, a combination of two amino acids by means of a peptide (-CO-NH-) link, into, out of, within or between cells.
X GO:0042939 The directed movement of a tripeptide, a compound containing three amino acids linked together by peptide bonds, into, out of, within or between cells.
X GO:0043201 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a leucine stimulus.
C GO:0006857 The directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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