Gene omics information

Query gene ID At5g45980
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g45980834638WOX8 (WUSCHEL RELATED HOMEOBOX 8)Arabidopsis thaliana WOX8 protein. Contains similarity to homeodomain transcription factor. Positively regulates early embryonic growth.S.X.H.G.
0.7083.5At4g10370826629DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMOS.X.H.G.
0.6579.6At5g61090836230nucleic acid bindingF:nucleic acid binding;P:biological_process unknown;C:chloroplast;MBOPFVAS.X.H.G.
0.6378.1At3g06870819871proline-rich family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MPOFVBS.X.H.G.
0.6176.7At4g33870829530peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOS.X.H.G.
0.6075.7At2g38100818388proton-dependent oligopeptide transport (POT) family proteinF:uracil transmembrane transporter activity, amino acid transmembrane transporter activity;P:oligopeptide transport;C:endomembrane system, membrane;PBMOFS.X.H.G.
0.6075.7At2g01960814727TET14 (TETRASPANIN14)Member of TETRASPANIN familyS.X.H.G.
0.6075.7At3g07250819913nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:intracellular;MOPFVBS.X.H.G.
0.5974.7At3g61510825324ACS1 (ACC SYNTHASE 1)Encodes a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC gene family. The gene is transcriptionally active but enzymatically inactive. The predicted amino-acid sequence of ACS1 is missing the highly conserved tripeptide, Thr-Asn-Pro (TNP), between Ile204 and Ser205. Introduction of TNP into ACS1 restores the ACS activity.S.X.H.G.
0.5974.7At3g14320820652zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
385.7100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
179.6100.0GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
133.299.9GSM284387Arabidopsis GSUS4bGSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.132e-654At2g33880817958HB-3Encodes a protein with similarity to WUS type homeodomain protein. Required for meristem growth and development and acts through positive regulation of WUS. Loss of function phenotypes include embryo lethality, hyponastic cotyledons, reduced root development and smaller meristems. Phenotypes can be rescued by addition of sucrose in the growth media.C.G.S.X.
0.111e-448At5g17810831649WOX12 (WUSCHEL related homeobox 12)Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box.C.G.S.X.
0.023e-240At4g31610829288REM1 (REPRODUCTIVE MERISTEM 1)Expressed specifically in reproductive meristems, member of a moderately sized gene family distantly related to known plant DNA binding proteinsC.G.S.X.
0.011e-138At4g34980829650SLP2Serine protease similar to subtilisin.C.G.S.X.
0.021e-138At2g44840819093ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13)encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.C.G.S.X.
0.021e-138At1g23550838965SRO2 (SIMILAR TO RCD ONE 2)Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation.C.G.S.X.
0.025e-136At5g56110835710ATMYB103 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 103)Encodes a member of the R2R3 MYB transcription factor gene family that is required for anther development by regulation tapetum development, callose dissolution and exine formation. It acts upstream of MS2.C.G.S.X.
0.015e-136At5g35160833470-F:unknown;P:unknown;C:integral to membrane, Golgi apparatus;MPOFC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e-138Glycine maxGma.1636.1.S1_atBU544413--2e-8At3g22240unknown proteinC.G.S.X.
0.039e-134Hordeum vulgareHV_CEb0012K14r2_x_atHV_CEb0012K14r2--2e+0At5g19030RNA recognition motif (RRM)-containing proteinC.G.S.X.
0.031e+036Oryza sativaOsAffx.10023.1.S1_at---0C.G.S.X.
0.097e-446Populus trichocarpaPtpAffx.218024.1.S1_atpmrna33529hypothetical protein-5e-26At2g33880HB-3C.G.S.X.
0.031e-138Triticum aestivumTaAffx.6103.1.S1_atCA691402--1e-2At4g36900RAP2.10 (related to AP2 10)C.G.S.X.
0.036e-134Vitis vinifera1612996_atCD798919--5e-2At4g11600ATGPX6 (GLUTATHIONE PEROXIDASE 6)C.G.S.X.
0.022e-136Zea maysZm.2064.1.A1_atCK144546--5e+0At2g27580zinc finger (AN1-like) family proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0008284Any process that activates or increases the rate or extent of cell proliferation.
XGO:0009793The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana.
XGO:0048825The process whose specific outcome is the progression of the cotyledon over time, from its formation to the mature structure. The cotyledon is the modified leaf (seed leaf), found as part of the embryo in plant seeds. It is involved in either storage or absorption of food reserves. Dicotyledonous seeds contain two cotyledons, while monocotyledonous seeds contain only one. The cotyledons may appear above ground and show photosynthetic activity in the seedling.
CGO:0006355Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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