Gene omics information

Query gene ID At5g45940
Gene name atnudt11 (Arabidopsis thaliana Nudix hydrolase homolog 11)
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g45940834634atnudt11 (Arabidopsis thaliana Nudix hydrolase homolog 11)Encodes a CoA pyrophosphatase, also has minor activity of NADH pyrophosphatase. Most strongly expressed in embryo cotyledon and hypocotyl, flower, and phloem of vascular tissue. Over-expression mutant had a bigger plant with wider rosette.S.X.H.G.
0.2726.2At3g57790824949glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:carbohydrate metabolic process;C:plasma membrane;PBFOMAVS.X.H.G.
0.2624.4At3g23690821950basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFMOBS.X.H.G.
0.2522.6At1g03520839471glycosyltransferase family 14 protein / core-2/I-branching enzyme family proteinF:transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity;P:carbohydrate biosynthetic process;C:membrane;MPBVOS.X.H.G.
0.2522.6At5g01970830706unknown proteinF:unknown;P:unknown;C:unknown;PMOFBS.X.H.G.
0.2319.3At4g14750827130IQD19 (IQ-domain 19)F:calmodulin binding;P:unknown;C:unknown;PMOFBVAS.X.H.G.
0.2319.3At4g10360826628-F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MFPOVS.X.H.G.
0.2115.8At4g17530827468ATRAB1CF:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane, vacuole, membrane;MOFPBVAS.X.H.G.
0.2014.4At1g67730843098YBR159Encodes one of the two Arabidopsis homologues to YBR159w encoding a S. cerevisiae beta-ketoacyl reductase (KCR), which catalyzes the first reduction during VLCFA (very long chain fatty acids, >18 carbon) elongation: KCR1 (At1g67730), KCR2 (At1g24470). Complementation of the yeast ybr159Delta mutant demonstrated that the two KCR proteins are divergent and that only AtKCR1 can restore heterologous elongase activity similar to the native yeast KCR gene.S.X.H.G.
0.2014.4At3g50530824217CRK (CDPK-related kinase)CDPK-related kinaseS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
170.8100.0GSM131608ATGE_42_DGSE5632AtGenExpress: Developmental series (flowers and pollen)
126.899.9GSM131606ATGE_42_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
105.899.9GSM131607ATGE_42_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
49.099.8GSM62696Columbia flowers_stage 13-14GSE2848Auxin Response Factor mediated flower gene expression
40.399.8GSM184906Arabidopsis, root cells, protophloem, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
25.399.6GSM131609ATGE_43_AGSE5632AtGenExpress: Developmental series (flowers and pollen)
22.699.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
22.199.6GSM131611ATGE_43_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.018e-238At5g25070832578unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVC.G.S.X.
0.023e-136At5g07800830673flavin-containing monooxygenase family protein / FMO family proteinF:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPAC.G.S.X.
0.033e-136At3g02220821238unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBAC.G.S.X.
0.011e+034At5g07820830675-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVAC.G.S.X.
0.011e+034At4g16970827405ATP binding / kinase/ protein kinase/ protein serine/threonine kinaseF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVAC.G.S.X.
0.021e+034At4g17840827507unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFPBVC.G.S.X.
0.031e+034At2g2950081749917.6 kDa class I small heat shock protein (HSP17.6B-CI)F:molecular_function unknown;P:response to oxidative stress, response to cyclopentenone, response to high light intensity, response to hydrogen peroxide, response to heat;C:unknown;BPOFAMC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e+034Glycine maxGmaAffx.80409.1.S1_atAW620804--5e-3At5g42750BKI1 (BRI1 kinase inhibitor 1)C.G.S.X.
0.042e-136Hordeum vulgareContig19125_atContig19125--4e-3At2g33980atnudt22 (Arabidopsis thaliana Nudix hydrolase homolog 22)C.G.S.X.
0.051e-242Oryza sativaOs05g0209400AK064744.1-NUDIX hydrolase domain containing protein8e-3At5g45940atnudt11 (Arabidopsis thaliana Nudix hydrolase homolog 11)C.G.S.X.
0.091e-138Populus trichocarpaPtpAffx.88497.2.A1_a_atBU879234hypothetical protein-7e-2At5g45940atnudt11 (Arabidopsis thaliana Nudix hydrolase homolog 11)C.G.S.X.
0.041e+034Triticum aestivumTaAffx.116175.3.S1_atCA652177--1e+0At5g45940atnudt11 (Arabidopsis thaliana Nudix hydrolase homolog 11)C.G.S.X.
0.032e+032Vitis vinifera1614648_atCB349102--2e+0At5g45940atnudt11 (Arabidopsis thaliana Nudix hydrolase homolog 11)C.G.S.X.
0.026e-134Zea maysZm.14518.1.A1_atCD434065pyruvate decarboxylase-6e-28At5g54960PDC2 (pyruvate decarboxylase-2)C.G.S.X.
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Biological processes

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ECCGO IDProcess Name
XGO:0007275The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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