CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g45840

Gene name leucine-rich repeat transmembrane protein kinase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g45840 834624 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
0.84 91.9 At5g28680 832975 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.84 91.9 At3g20190 821563 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;PMOFBVA S.X. H.G.
0.81 90.4 At1g58120 842179 unknown protein F:unknown;P:unknown;C:unknown;P S.X. H.G.
0.79 89.1 At1g44160 841019 DNAJ chaperone C-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:unknown;BOMFPAV S.X. H.G.
0.79 89.1 At2g07040 815274 PRK2A Pollen receptor kinase. Coexpression of AtPRK2a with AtRopGEF12 resulted in isotropic pollen tube growth. S.X. H.G.
0.79 89.1 At1g10620 837605 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MOPBFVA S.X. H.G.
0.78 88.6 At3g09530 820110 ATEXO70H3 (exocyst subunit EXO70 family protein H3) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. S.X. H.G.
0.78 88.6 At5g12180 831091 CPK17 member of Calcium Dependent Protein Kinase S.X. H.G.
0.78 88.6 At3g20580 821605 COBL10 (COBRA-LIKE PROTEIN 10 PRECURSOR) F:unknown;P:biological_process unknown;C:anchored to membrane;P S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
182.0 100.0 E-MEXP-285-raw-cel-440782791
177.2 100.0 E-MEXP-285-raw-cel-440782725
154.8 99.9 GSM154508 Arabidopsis growing pollen tubes rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
148.2 99.9 E-MEXP-1138-raw-cel-1432772906
144.9 99.9 E-MEXP-1138-raw-cel-1432772522
142.3 99.9 E-MEXP-1138-raw-cel-1432772842
136.8 99.9 E-MEXP-1138-raw-cel-1432772874
135.5 99.9 E-MEXP-1138-raw-cel-1432772650
131.7 99.9 E-MEXP-1138-raw-cel-1432772586
130.8 99.9 E-MEXP-1138-raw-cel-1432772810
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.45 5e-135 482 At4g18640 827598 MRH1 (morphogenesis of root hair 1) Required for root hair elongation during tip growth. C.G. S.X.
0.03 7e-8 59 At5g07150 830606 leucine-rich repeat family protein F:protein binding, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.01 4e-3 44 At4g11530 826757 kinase F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.02 4e-3 44 At4g23290 828428 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:mitochondrion;MPOBFVA C.G. S.X.
0.01 4e-3 44 At1g11210 837662 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;PO C.G. S.X.
0.03 2e-2 42 At5g58540 835967 protein kinase family protein F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;PMOBFVA C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-4 48 Glycine max GmaAffx.24583.1.S1_at BE609540 - - 4e+0 At4g04730 unknown protein C.G. S.X.
0.04 8e-6 52 Hordeum vulgare Contig13188_at Contig13188 - - 1e-4 At5g58540 protein kinase family protein C.G. S.X.
0.07 1e-7 59 Oryza sativa Os01g0674800 AK059169.1 - Protein kinase domain containing protein 8e-8 At5g45840 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.06 2e-8 61 Populus trichocarpa Ptp.2656.1.S1_at CV256702 hypothetical protein - 7e-7 At2g40270 protein kinase family protein C.G. S.X.
0.02 3e-4 48 Triticum aestivum TaAffx.93532.1.S1_at CA601450 - - 6e-4 At4g18640 MRH1 (morphogenesis of root hair 1) C.G. S.X.
0.03 1e-6 54 Vitis vinifera 1610359_at CB971752 hypothetical protein LOC100265601 - 8e-31 At3g56050 protein kinase family protein C.G. S.X.
0.02 2e-3 44 Zea mays ZmAffx.777.1.A1_at AI746253 hypothetical protein LOC100191464 - 2e-1 At5g11440 CID5 C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006468 The process of introducing a phosphate group on to a protein.
C GO:0007169 The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage