CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g45830

Gene name DOG1 (DELAY OF GERMINATION 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g45830 834623 DOG1 (DELAY OF GERMINATION 1) Encodes DOG1 (DELAY OF GERMINATION 1). A quantitative trait locus involved in the control of seed dormancy. Belongs to a novel plant-specific gene family whose members include: DOG1-like 1-4 (DOGL1-4, At4g18660, At4g18680, At4g18690, At4g18650 respectively) and DOG1. DOG1 expression is seed-specific. S.X. H.G.
0.88 94.0 At1g17810 838359 BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) beta-tonoplast intrinsic protein (beta-TIP) mRNA, complete S.X. H.G.
0.87 93.5 At2g33520 817917 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF S.X. H.G.
0.87 93.5 At1g29680 839845 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPF S.X. H.G.
0.86 93.1 At5g45690 834608 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPF S.X. H.G.
0.85 92.4 At3g18570 821388 glycine-rich protein / oleosin F:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;P S.X. H.G.
0.85 92.4 At1g05510 837053 - Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. S.X. H.G.
0.84 91.9 At5g57550 835859 XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3) xyloglucan endotransglycosylase-related protein (XTR3) S.X. H.G.
0.84 91.9 At5g59170 836035 proline-rich family protein F:unknown;P:unknown;C:endomembrane system;MPOBFVA S.X. H.G.
0.84 91.9 At1g54860 841925 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
694.3 100.0 GSM131703 ATGE_83_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
629.0 100.0 GSM131705 ATGE_83_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
529.9 100.0 GSM131704 ATGE_83_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
266.9 100.0 GSM131701 ATGE_82_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
264.2 100.0 GSM131702 ATGE_82_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
262.1 100.0 GSM131698 ATGE_81_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
256.4 100.0 GSM131708 ATGE_84_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
252.7 100.0 GSM131700 ATGE_82_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
249.2 100.0 GSM131706 ATGE_84_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
244.4 100.0 GSM131697 ATGE_81_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.05 7e-3 42 At4g18660 827600 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 1e-1 38 At3g11290 820300 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF C.G. S.X.
0.02 4e-1 36 At4g31040 829231 proton extrusion protein-related F:unknown;P:biological_process unknown;C:integral to membrane, chloroplast;PBOF C.G. S.X.
0.03 4e-1 36 At4g31470 829274 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB C.G. S.X.
0.01 2e+0 34 At5g23390 832403 unknown protein F:molecular_function unknown;P:unknown;C:cellular_component unknown;P C.G. S.X.
0.01 2e+0 34 At5g13980 831246 glycosyl hydrolase family 38 protein F:in 6 functions;P:mannose metabolic process, carbohydrate metabolic process;C:apoplast, cell wall, plasma membrane, vacuole, plant-type cell wall;MOPBFA C.G. S.X.
0.01 2e+0 34 At4g38200 829976 guanine nucleotide exchange family protein F:binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity;P:regulation of ARF protein signal transduction;C:chloroplast;MFOPB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-1 38 Glycine max GmaAffx.24792.1.S1_at CA819334 - - 3e-2 At5g45830 DOG1 (DELAY OF GERMINATION 1) C.G. S.X.
0.03 1e-2 40 Hordeum vulgare Contig9765_s_at Contig9765 - - 7e-2 At3g14480 glycine/proline-rich protein C.G. S.X.
0.03 3e+0 34 Oryza sativa Os05g0290200 9633.m01960 - - 3e-1 At5g19800 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.03 2e-1 38 Populus trichocarpa PtpAffx.200211.1.S1_s_at pmrna397 hypothetical protein - 3e+0 At5g50470 NF-YC7 (NUCLEAR FACTOR Y, SUBUNIT C7) C.G. S.X.
0.03 1e-1 38 Triticum aestivum Ta.6347.2.S1_a_at CA599406 - - 3e-1 At5g35290 unknown protein C.G. S.X.
0.03 3e-2 38 Vitis vinifera 1613095_at BQ796088 hypothetical protein LOC100250274 - 5e-6 At3g04880 DRT102 (DNA-DAMAGE-REPAIR/TOLERATION 2) C.G. S.X.
0.03 1e+1 30 Zea mays ZmAffx.1100.1.A1_at AW146995 - - 4e-1 At5g01940 eukaryotic translation initiation factor 2B family protein / eIF-2B family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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