CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g45690

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g45690 834608 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPF S.X. H.G.
0.86 93.1 At1g05510 837053 - Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. S.X. H.G.
0.84 91.9 At5g55240 835617 caleosin-related family protein / embryo-specific protein, putative F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;PFO S.X. H.G.
0.76 87.4 At4g10020 826593 AtHSD5 (hydroxysteroid dehydrogenase 5) F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAV S.X. H.G.
0.74 86.1 At1g29680 839845 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPF S.X. H.G.
0.70 83.5 At2g33520 817917 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF S.X. H.G.
0.67 81.6 At3g56350 824802 superoxide dismutase (Mn), putative / manganese superoxide dismutase, putative F:superoxide dismutase activity, metal ion binding;P:superoxide metabolic process, removal of superoxide radicals;C:mitochondrion, endomembrane system;BOFMPAV S.X. H.G.
0.63 78.1 At1g14950 838060 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P S.X. H.G.
0.58 73.8 At1g17810 838359 BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) beta-tonoplast intrinsic protein (beta-TIP) mRNA, complete S.X. H.G.
0.50 65.3 At5g01670 831701 aldose reductase, putative F:oxidoreductase activity;P:oxidation reduction;C:unknown;BMOFPA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
479.2 100.0 GSM10456 WT Post-Mature Green Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
453.3 100.0 GSM10454 WT Post-Mature Green Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
349.8 100.0 GSM131708 ATGE_84_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
340.8 100.0 GSM131706 ATGE_84_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
327.7 100.0 GSM131700 ATGE_82_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
306.3 100.0 GSM131707 ATGE_84_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
281.3 100.0 GSM131702 ATGE_82_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
260.6 100.0 GSM131703 ATGE_83_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
260.1 100.0 GSM131705 ATGE_83_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
258.6 100.0 GSM131701 ATGE_82_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.51 4e-50 198 At4g18920 827627 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPF C.G. S.X.
0.10 2e-5 50 At1g29680 839845 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPF C.G. S.X.
0.01 4e-1 36 At4g01690 827991 PPOX Encodes protoporphyrinogen oxidase (PPOX). C.G. S.X.
0.02 4e-1 36 At1g77855 844121 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 1e+0 34 At5g12430 831118 DNAJ heat shock N-terminal domain-containing protein F:heat shock protein binding, binding;P:protein folding;C:chloroplast;BMOFPAV C.G. S.X.
0.02 1e+0 34 At4g26650 828772 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MPOFBVA C.G. S.X.
0.02 1e+0 34 At2g41120 818711 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;BOP C.G. S.X.
0.02 1e+0 34 At1g66800 842998 cinnamyl-alcohol dehydrogenase family / CAD family similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-3 44 Glycine max Gma.2863.1.S1_at CA802892 - - 2e-9 At4g18920 unknown protein C.G. S.X.
0.03 7e-1 34 Hordeum vulgare EBro08_SQ009_L23_at EBro08_SQ009_L23 - - 1e+0 At1g03650 GCN5-related N-acetyltransferase (GNAT) family protein C.G. S.X.
0.03 3e+0 34 Oryza sativa OsAffx.16204.1.S1_at - - - 0 C.G. S.X.
0.04 2e+0 34 Populus trichocarpa PtpAffx.203951.1.S1_at pmrna7800 hypothetical protein - 3e-1 At3g60890 ZPR2 (LITTLE ZIPPER 2) C.G. S.X.
0.03 6e-3 42 Triticum aestivum TaAffx.51867.1.S1_at CA717368 - - 2e-1 At1g29680 unknown protein C.G. S.X.
0.08 1e-7 56 Vitis vinifera 1613370_at CB346796 hypothetical protein LOC100246418 - 5e-4 At1g29680 unknown protein C.G. S.X.
0.02 6e-1 34 Zea mays Zm.1757.1.S1_at BG841022 R2R3MYB-domain protein - 8e-3 At2g16720 MYB7 (MYB DOMAIN PROTEIN 7) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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