CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g45610

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g45610 834601 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.15 7.8 At1g65070 842815 DNA mismatch repair MutS family protein F:damaged DNA binding, mismatched DNA binding, ATP binding;P:mismatch repair, maintenance of fidelity during DNA-dependent DNA replication;C:nucleus;BOMFPAV S.X. H.G.
0.12 4.9 At5g42400 834246 SDG25 (SET DOMAIN PROTEIN 25) F:unknown;P:unknown;C:unknown;MOPFBAV S.X. H.G.
0.09 2.8 At1g77600 844095 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MPFOB S.X. H.G.
0.09 2.8 At1g63130 842617 pentatricopeptide (PPR) repeat-containing protein Transacting siRNA generating locus. Its derived siR9as targets AT1G62930 for cleavage. Itself is targeted by TAS2-derived ta-siR2140 for cleavage. S.X. H.G.
0.05 1.1 At5g03415 831847 DPB Encodes a homolog of the animal DP protein. DP, in animals, forms a heterodimer with E2F and plays a central role in G1/S transition in the cell division cycle. DPB has been shown to interact with non phosphorylated E2Fc; when E2Fc is phosphorylated, the formation of the E2Fc/DPB heterodimer is lost. S.X. H.G.
0.01 0.2 At2g36240 818196 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
136.1 99.9 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
117.3 99.9 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
106.6 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
104.4 99.9 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
100.2 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
99.7 99.9 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
97.7 99.9 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
97.2 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
95.2 99.9 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
94.2 99.9 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 6e-2 40 At5g41220 834124 ATGSTT3 (GLUTATHIONE S-TRANSFERASE THETA 3) Encodes glutathione transferase belonging to the theta class of GSTs. Naming convention according to Wagner et al. (2002). C.G. S.X.
0.01 2e-1 38 At5g17230 831587 phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase Encodes phytoene synthase. C.G. S.X.
0.01 2e-1 38 At2g30620 817612 histone H1.2 F:DNA binding;P:nucleosome assembly;C:nucleolus, nucleus, nucleosome;BMOFPVA C.G. S.X.
0.01 9e-1 36 At5g57180 835824 CIA2 (CHLOROPLAST IMPORT APPARATUS 2) Transcription regulator responsible for specific upregulation of the translocon genes atToc33 and atToc75 in leaves. Involved in protein import into chloroplast. C.G. S.X.
0.01 9e-1 36 At5g33406 833333 protein dimerization F:protein dimerization activity;P:biological_process unknown;C:mitochondrion;POMF C.G. S.X.
0.01 9e-1 36 At3g23660 821946 transport protein, putative F:protein binding, transporter activity, zinc ion binding;P:intracellular protein transport, transport, ER to Golgi vesicle-mediated transport;C:COPII vesicle coat;MFOP C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-1 38 Glycine max GmaAffx.5822.1.S1_at BU080575 - - 1e-2 At5g61590 AP2 domain-containing transcription factor family protein C.G. S.X.
0.01 2e+0 34 Hordeum vulgare HVSMEg0007B23r2_at HVSMEg0007B23r2 - - 5e+0 At1g07640 OBP2 C.G. S.X.
0.02 5e-1 38 Oryza sativa Os01g0223150 NM_188519.1 - - 4e-1 At2g27130 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.03 1e-3 46 Populus trichocarpa PtpAffx.220084.1.S1_s_at pmrna36398 hypothetical protein - 8e-4 At5g45610 unknown protein C.G. S.X.
0.01 1e+0 36 Triticum aestivum TaAffx.9404.1.S1_at CA599823 - - 4e+0 At5g11340 GCN5-related N-acetyltransferase (GNAT) family protein C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1617745_at CF372303 hypothetical protein LOC100256638 - 5e+0 At5g44710 - C.G. S.X.
0.02 2e+0 34 Zea mays Zm.14806.1.A1_at CF632779 hypothetical protein LOC100217201 - 1e-31 At1g66340 ETR1 (ETHYLENE RESPONSE 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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