CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g45540

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.70 83.5 At5g45540 834590 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.35 41.6 At3g44760 823607 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.33 38.1 At3g13228 820519 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMOFV S.X. H.G.
0.30 32.1 At4g22650 828361 - F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.29 30.3 At3g58230 824992 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.28 30.3 At2g44930 819102 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.27 26.2 At5g47510 834801 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein F:transporter activity;P:transport;C:cellular_component unknown;MPFO S.X. H.G.
0.26 24.4 At3g45110 823647 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.24 20.7 At4g17910 827515 transferase, transferring acyl groups F:transferase activity, transferring acyl groups;P:GPI anchor biosynthetic process;C:integral to membrane, endoplasmic reticulum membrane;MFPO S.X. H.G.
0.23 19.3 At3g57820 3769732 - F:unknown;P:unknown;C:unknown S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
215.9 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
207.1 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
198.9 100.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
196.5 100.0 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
189.8 100.0 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
188.6 100.0 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
185.3 100.0 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
172.5 100.0 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
166.8 100.0 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
165.8 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.10 3e-35 151 At4g19080 827646 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P C.G. S.X.
0.25 4e-19 97 At5g45480 834584 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P C.G. S.X.
0.06 5e-9 63 At5g45470 834583 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P C.G. S.X.
0.07 5e-6 54 At5g45530 834589 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.04 3e-4 48 At4g19090 827647 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB C.G. S.X.
0.01 2e-2 42 At1g23060 838914 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPOBFV C.G. S.X.
0.01 3e-1 38 At5g45460 834582 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 3e-1 38 At3g24460 822036 TMS membrane family protein / tumour differentially expressed (TDE) family protein F:unknown;P:unknown;C:membrane;MFPO C.G. S.X.
0.01 3e-1 38 At1g60800 842374 NIK3 (NSP-INTERACTING KINASE 3) F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e+0 36 Glycine max Gma.16987.1.A1_at BE820841 - - 8e-7 At1g23820 SPDS1 (spermidine synthase 1) C.G. S.X.
0.02 2e+0 34 Hordeum vulgare Contig21718_at Contig21718 - - 3e-1 At1g07080 gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein C.G. S.X.
0.01 2e-1 40 Oryza sativa Os11g0639300 AK102044.1 - Protein of unknown function DUF594 family protein 5e-3 At4g19080 unknown protein C.G. S.X.
0.03 1e-4 50 Populus trichocarpa PtpAffx.49041.3.A1_at BP931742 - - 4e-6 At4g19080 unknown protein C.G. S.X.
0.01 3e-1 38 Triticum aestivum TaAffx.28064.1.S1_at CA665734 - - 2e-4 At1g53590 NTMC2T6.1 C.G. S.X.
0.01 9e-2 38 Vitis vinifera 1606746_a_at BQ798562 hypothetical protein LOC100257397 - 2e-2 At4g02450 glycine-rich protein C.G. S.X.
0.01 2e+0 34 Zea mays Zm.13270.1.A1_at AY107233.1 - - 4e-13 At1g34000 OHP2 (ONE-HELIX PROTEIN 2) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage