CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g45380

Gene name sodium:solute symporter family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g45380 834574 sodium:solute symporter family protein F:urea transmembrane transporter activity, solute:sodium symporter activity;P:cellular response to nitrogen starvation;C:plasma membrane;BOMFAP S.X. H.G.
0.40 50.8 At5g33290 833302 XGD1 (XYLOGALACTURONAN DEFICIENT 1) Acts as a xylogalacturonan xylosyltransferase within the XGA biosynthesis pathway. Involved in pectin biosynthesis. S.X. H.G.
0.31 33.8 At2g19130 816430 S-locus lectin protein kinase family protein F:protein serine/threonine kinase activity, sugar binding, protein kinase activity, ATP binding;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA S.X. H.G.
0.29 30.3 At5g61010 836222 ATEXO70E2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN E2) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. S.X. H.G.
0.28 30.3 At3g26210 822222 CYP71B23 putative cytochrome P450 S.X. H.G.
0.26 24.4 At2g29990 817549 NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) F:NADH dehydrogenase activity, oxidoreductase activity, FAD binding;P:unknown;C:intrinsic to mitochondrial inner membrane;BOFPAM S.X. H.G.
0.25 22.6 At2g25000 817039 WRKY60 Pathogen-induced transcription factor. Forms protein complexes with itself and with WRKY40. Coexpression with WRKY18 or WRKY40 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two. S.X. H.G.
0.23 19.3 At5g37600 833738 ATGSR1 encodes a cytosolic glutamine synthetase, the enzyme has high affinity with substrate ammonium S.X. H.G.
0.22 17.5 At4g13510 826983 AMT1 Encodes a plasma membrane localized ammonium transporter. Contains a cytosolic trans-activation domain essential for ammonium uptake. S.X. H.G.
0.19 12.7 At1g22070 838812 TGA3 Encodes a transcription factor. Like other TGAla-related factors, TGA3 has a highly conserved bZIP region and exhibits similar DNA-binding properties. S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
134.8 99.9 GSM157307 Gan_1-2_mutant-nitrate-minus(ANM)_Rep1_ATH1 GSE6824 Identification of genes involved in nutritional regulation of root architecture
133.8 99.9 GSM157305 Gan_1-1_wildtype-nitrate-minus(WNM)_Rep1_ATH1 GSE6824 Identification of genes involved in nutritional regulation of root architecture
132.8 99.9 GSM157306 Gan_1-3_wildtype-nitrate-minus(WNM)_Rep2_ATH1 GSE6824 Identification of genes involved in nutritional regulation of root architecture
125.5 99.9 GSM218596 Whole roots 3.5hr KNO3 treated then frozen, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
81.9 99.9 GSM131537 ATGE_25_A GSE5630 AtGenExpress: Developmental series (leaves)
73.2 99.9 GSM131538 ATGE_25_B GSE5630 AtGenExpress: Developmental series (leaves)
70.5 99.9 GSM128683 Underwood_1-36_E.coli-0157-H7-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
64.6 99.8 GSM131539 ATGE_25_C GSE5630 AtGenExpress: Developmental series (leaves)
62.0 99.8 GSM184533 Protoplasted root cells 2hr KCl control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
58.9 99.8 GSM184561 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes with KNO3, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 7e-2 40 At1g34210 840320 SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2) Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. C.G. S.X.
0.01 3e-1 38 At4g35720 829724 unknown protein F:unknown;P:unknown;C:unknown;PO C.G. S.X.
0.01 3e-1 38 At4g22790 828378 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA C.G. S.X.
0.01 3e-1 38 At3g05340 819698 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF C.G. S.X.
0.01 1e+0 36 At5g55480 835641 SVL1 (SHV3-LIKE 1) Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. C.G. S.X.
0.01 1e+0 36 At3g59040 825073 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMFBA C.G. S.X.
0.01 1e+0 36 At3g52370 824402 FLA15 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 15 PRECURSOR) F:unknown;P:cell adhesion;C:endomembrane system;BOMPFAV C.G. S.X.
0.01 1e+0 36 At2g17010 816204 mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:membrane;BOPFAM C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 4e-7 57 Glycine max GmaAffx.61930.1.S1_at BG652966 - - 1e-7 At5g45380 sodium:solute symporter family protein C.G. S.X.
0.01 5e-1 36 Hordeum vulgare HVSMEn0024A10f_at HVSMEn0024A10f - - 6e-1 At2g36053 unknown protein C.G. S.X.
0.02 2e+0 36 Oryza sativa OsAffx.2978.1.S1_at - - - 0 C.G. S.X.
0.25 9e-39 163 Populus trichocarpa PtpAffx.203130.1.S1_at pmrna6207 urea active transporter-like protein, solute:sodium symporter - 5e-39 At5g45380 sodium:solute symporter family protein C.G. S.X.
0.02 1e+0 36 Triticum aestivum Ta.29414.1.A1_at BJ261088 - - 4e+0 At5g44570 unknown protein C.G. S.X.
0.02 3e-1 36 Vitis vinifera 1618204_at BQ795716 hypothetical protein LOC100241680 - 2e-1 At5g63870 PP7 (SERINE/THREONINE PHOSPHATASE 7) C.G. S.X.
0.01 2e+0 34 Zea mays Zm.4137.1.S1_at AI855128 - - 2e+0 At4g21330 DYT1 (DYSFUNCTIONAL TAPETUM 1) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0006995 A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of nitrogen.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage