Gene omics information

Query gene ID At5g45380
Gene name sodium:solute symporter family protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g45380834574sodium:solute symporter family proteinF:urea transmembrane transporter activity, solute:sodium symporter activity;P:cellular response to nitrogen starvation;C:plasma membrane;BOMFAPS.X.H.G.
0.4050.8At5g33290833302XGD1 (XYLOGALACTURONAN DEFICIENT 1)Acts as a xylogalacturonan xylosyltransferase within the XGA biosynthesis pathway. Involved in pectin biosynthesis.S.X.H.G.
0.3133.8At2g19130816430S-locus lectin protein kinase family proteinF:protein serine/threonine kinase activity, sugar binding, protein kinase activity, ATP binding;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVAS.X.H.G.
0.2930.3At5g61010836222ATEXO70E2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN E2)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.S.X.H.G.
0.2830.3At3g26210822222CYP71B23putative cytochrome P450S.X.H.G.
0.2624.4At2g29990817549NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2)F:NADH dehydrogenase activity, oxidoreductase activity, FAD binding;P:unknown;C:intrinsic to mitochondrial inner membrane;BOFPAMS.X.H.G.
0.2522.6At2g25000817039WRKY60Pathogen-induced transcription factor. Forms protein complexes with itself and with WRKY40. Coexpression with WRKY18 or WRKY40 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two.S.X.H.G.
0.2319.3At5g37600833738ATGSR1encodes a cytosolic glutamine synthetase, the enzyme has high affinity with substrate ammoniumS.X.H.G.
0.2217.5At4g13510826983AMT1Encodes a plasma membrane localized ammonium transporter. Contains a cytosolic trans-activation domain essential for ammonium uptake.S.X.H.G.
0.1912.7At1g22070838812TGA3Encodes a transcription factor. Like other TGAla-related factors, TGA3 has a highly conserved bZIP region and exhibits similar DNA-binding properties.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
134.899.9GSM157307Gan_1-2_mutant-nitrate-minus(ANM)_Rep1_ATH1GSE6824Identification of genes involved in nutritional regulation of root architecture
133.899.9GSM157305Gan_1-1_wildtype-nitrate-minus(WNM)_Rep1_ATH1GSE6824Identification of genes involved in nutritional regulation of root architecture
132.899.9GSM157306Gan_1-3_wildtype-nitrate-minus(WNM)_Rep2_ATH1GSE6824Identification of genes involved in nutritional regulation of root architecture
125.599.9GSM218596Whole roots 3.5hr KNO3 treated then frozen, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis root
81.999.9GSM131537ATGE_25_AGSE5630AtGenExpress: Developmental series (leaves)
73.299.9GSM131538ATGE_25_BGSE5630AtGenExpress: Developmental series (leaves)
70.599.9GSM128683Underwood_1-36_E.coli-0157-H7-10e8-7h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
64.699.8GSM131539ATGE_25_CGSE5630AtGenExpress: Developmental series (leaves)
62.099.8GSM184533Protoplasted root cells 2hr KCl control treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis root
58.999.8GSM184561Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes with KNO3, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.017e-240At1g34210840320SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2)Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production.C.G.S.X.
0.013e-138At4g35720829724unknown proteinF:unknown;P:unknown;C:unknown;POC.G.S.X.
0.013e-138At4g22790828378MATE efflux family proteinF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMAC.G.S.X.
0.013e-138At3g05340819698pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFC.G.S.X.
0.011e+036At5g55480835641SVL1 (SHV3-LIKE 1)Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development.C.G.S.X.
0.011e+036At3g59040825073pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMFBAC.G.S.X.
0.011e+036At3g52370824402FLA15 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 15 PRECURSOR)F:unknown;P:cell adhesion;C:endomembrane system;BOMPFAVC.G.S.X.
0.011e+036At2g17010816204mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;BOPFAMC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.064e-757Glycine maxGmaAffx.61930.1.S1_atBG652966--1e-7At5g45380sodium:solute symporter family proteinC.G.S.X.
0.015e-136Hordeum vulgareHVSMEn0024A10f_atHVSMEn0024A10f--6e-1At2g36053unknown proteinC.G.S.X.
0.022e+036Oryza sativaOsAffx.2978.1.S1_at---0C.G.S.X.
0.259e-39163Populus trichocarpaPtpAffx.203130.1.S1_atpmrna6207urea active transporter-like protein, solute:sodium symporter-5e-39At5g45380sodium:solute symporter family proteinC.G.S.X.
0.021e+036Triticum aestivumTa.29414.1.A1_atBJ261088--4e+0At5g44570unknown proteinC.G.S.X.
0.023e-136Vitis vinifera1618204_atBQ795716hypothetical protein LOC100241680-2e-1At5g63870PP7 (SERINE/THREONINE PHOSPHATASE 7)C.G.S.X.
0.012e+034Zea maysZm.4137.1.S1_atAI855128--2e+0At4g21330DYT1 (DYSFUNCTIONAL TAPETUM 1)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0006995A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of nitrogen.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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