CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g45370

Gene name nodulin-related / integral membrane family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At5g45370 834573 nodulin-related / integral membrane family protein F:unknown;P:unknown;C:membrane;BOPAMF S.X. H.G.
0.73 85.5 At5g05310 830413 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBP S.X. H.G.
0.33 38.1 At4g00590 827968 asparaginase 2 family protein F:hydrolase activity;P:unknown;C:unknown;BOMFPA S.X. H.G.
0.29 30.3 At5g64970 836621 mitochondrial substrate carrier family protein F:transporter activity, binding;P:transport, mitochondrial transport;C:mitochondrion, mitochondrial inner membrane, plastid;MFPO S.X. H.G.
0.25 22.6 At1g57600 842136 membrane bound O-acyl transferase (MBOAT) family protein F:acyltransferase activity;P:biological_process unknown;C:membrane;BOMFP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
270.2 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
123.2 99.9 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
101.2 99.9 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
75.6 99.9 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
40.5 99.8 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
26.5 99.7 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
21.7 99.6 GSM176880 AWP_Control_2 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
20.7 99.6 GSM133773 Lindsey_1-25_torpedo-meristem_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
19.1 99.6 GSM142904 WW002_ATH1_A1-willa-CON-REP2 GSE6181 Assembly of the cell wall pectic matrix.
16.1 99.5 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.61 1e-72 274 At4g19185 827657 integral membrane family protein F:unknown;P:unknown;C:membrane;BPOAM C.G. S.X.
0.17 6e-16 85 At3g45870 823730 integral membrane family protein / nodulin MtN21-related F:unknown;P:unknown;C:membrane;BPOAMF C.G. S.X.
0.01 5e-1 36 At5g22320 832292 leucine-rich repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOBPFVA C.G. S.X.
0.01 5e-1 36 At4g14340 827076 CKI1 (CASEIN KINASE I) Phosphorylates serine or threonine residues that are near and C-terminal to acidic side chains on a variety of target proteins C.G. S.X.
0.01 5e-1 36 At3g19870 821524 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MOP C.G. S.X.
0.01 5e-1 36 At3g23340 821915 ckl10 (Casein Kinase I-like 10) F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 3e-9 63 Glycine max GmaAffx.51551.2.S1_x_at BU081474 - - 1e-3 At4g19185 integral membrane family protein C.G. S.X.
0.02 1e+0 34 Hordeum vulgare HU03G20u_at HU03G20u - - 1e+0 At3g20060 UBC19 (ubiquitin-conjugating enzyme19) C.G. S.X.
0.05 2e-2 42 Oryza sativa Os02g0703900 AK102115.1 - Nodulin-like protein 4e-6 At4g19185 integral membrane family protein C.G. S.X.
0.22 9e-13 75 Populus trichocarpa PtpAffx.223338.1.S1_at pmrna41280 mtn21-like protein - 4e-20 At3g45870 integral membrane family protein / nodulin MtN21-related C.G. S.X.
0.02 9e+0 32 Triticum aestivum TaAffx.111006.1.S1_at CA649969 - - 4e+0 At1g76770 heat shock protein-related C.G. S.X.
0.11 2e-1 36 Vitis vinifera 1621404_at CB916166 hypothetical protein LOC100263130 - 5e-28 At3g45870 integral membrane family protein / nodulin MtN21-related C.G. S.X.
0.03 1e+1 30 Zea mays ZmAffx.1288.1.S1_s_at 40794996-21 - - 3e+0 At1g28200 FIP1 (FH INTERACTING PROTEIN 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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