CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g45260

Gene name RRS1 (RESISTANT TO RALSTONIA SOLANACEARUM 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.19 12.7 At5g45260 834562 RRS1 (RESISTANT TO RALSTONIA SOLANACEARUM 1) Confers resistance to Ralstonia solanacearum. Similar to NBLS-TIR resistance genes,and also contains similarity to transcription factors. Interacts with pathogen effector protein AvrPop2. S.X. H.G.
0.57 73.8 At2g25350 817073 phox (PX) domain-containing protein F:phosphoinositide binding;P:signal transduction, intracellular signaling cascade;C:unknown;MOFBPAV S.X. H.G.
0.25 22.6 At5g61990 836320 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POMFBA S.X. H.G.
0.10 3.4 At2g33540 817919 CPL3 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 3) F:phosphoprotein phosphatase activity, CTD phosphatase activity;P:response to salt stress;C:nucleus;MOFPBV S.X. H.G.
0.09 2.8 At2g19390 816458 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
205.5 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
169.5 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
158.9 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
157.2 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
152.9 99.9 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
150.5 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
148.8 99.9 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
146.4 99.9 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
146.2 99.9 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
138.4 99.9 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.65 0 1074 At5g45050 834536 TTR1 Encodes a member of WRKY Transcription Factor (Group II-e) that confers resistance to tobacco ringspot nepovirus. C.G. S.X.
0.28 9e-46 186 At4g36140 829771 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PBMOFA C.G. S.X.
0.12 5e-35 151 At2g17050 816210 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV C.G. S.X.
0.17 6e-16 87 At3g51560 824319 ATP binding / protein binding / transmembrane receptor F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFVA C.G. S.X.
0.07 9e-15 83 At5g17890 831657 DAR4 (DA1-RELATED PROTEIN 4) F:protein binding, zinc ion binding, ATP binding;P:defense response, apoptosis;C:unknown;PMOFBVA C.G. S.X.
0.07 9e-15 83 At2g34830 818048 WRKY35 (WRKY DNA-binding protein 35) member of WRKY Transcription Factor; Group II-e C.G. S.X.
0.11 1e-7 59 At4g19520 827694 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 3e+0 36 Glycine max PsAffx.psHB023xD24f_at PsAffx.psHB023xD24f - - 2e-15 At2g47260 WRKY23 C.G. S.X.
0.01 4e+0 34 Hordeum vulgare Contig26156_at Contig26156 - - 8e-2 At5g03220 transcriptional co-activator-related C.G. S.X.
0.01 1e+0 38 Oryza sativa Os04g0620800 AU030779 - NB-ARC domain containing protein 1e+0 At2g46640 unknown protein C.G. S.X.
0.02 7e-1 38 Populus trichocarpa PtpAffx.218725.1.S1_x_at pmrna34447 hypothetical protein - 6e-10 At1g30650 WRKY14 C.G. S.X.
0.01 2e+0 36 Triticum aestivum Ta.12565.3.S1_a_at CA705730 ubiquitin-associated protein - 5e-1 At1g35255 unknown protein C.G. S.X.
0.02 2e-3 44 Vitis vinifera 1617852_at CF209939 hypothetical protein LOC100261701 - 1e+0 At1g52560 26.5 kDa class I small heat shock protein-like (HSP26.5-P) C.G. S.X.
0.01 3e+0 34 Zea mays Zm.11921.1.A1_at BM381857 hypothetical protein LOC100273374 - 3e-1 At4g31840 plastocyanin-like domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0008219 The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death.
X GO:0009816 A response of an organism to a bacterium that prevents the occurrence or spread of disease.
C GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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