CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g45090

Gene name AtPP2-A7 (Phloem protein 2-A7)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.36 43.6 At5g45090 834541 AtPP2-A7 (Phloem protein 2-A7) F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P S.X. H.G.
0.57 73.8 At4g26560 828763 CBL7 (CALCINEURIN B-LIKE 7) Encodes calcineurin B-like protein 7 (CBL7). S.X. H.G.
0.50 65.3 At3g45330 823671 lectin protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.50 65.3 At5g50140 835079 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOBFVA S.X. H.G.
0.20 14.4 At1g53640 841800 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFOBV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
272.4 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
120.4 99.9 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
77.5 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
75.2 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
73.9 99.9 E-MEXP-807-raw-cel-1173273252
70.0 99.9 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
68.7 99.9 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
66.6 99.8 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
65.7 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
60.4 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 3e-2 40 At5g45060 834537 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA C.G. S.X.
0.03 3e-2 40 At4g19840 827728 ATPP2-A1 encodes a protein similar to phloem lectin in cucumber and celery. Gene is expressed in the phloem, predominantly in the companion cells. C.G. S.X.
0.10 1e-1 38 At5g45080 834539 AtPP2-A6 (Phloem protein 2-A6) F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P C.G. S.X.
0.04 1e-1 38 At5g45070 834538 AtPP2-A8 (Phloem protein 2-A8) F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P C.G. S.X.
0.03 1e-1 38 At1g23530 838962 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.01 5e-1 36 At4g23860 828485 PHD finger protein-related F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:biological_process unknown;C:cytoplasm;MFOP C.G. S.X.
0.02 5e-1 36 At3g15115 820742 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 7e-1 36 Glycine max PsAffx.C85000008_at PsAffx.C85000008 - - 1e-1 At3g51060 STY1 (STYLISH 1) C.G. S.X.
0.03 9e-1 34 Hordeum vulgare Contig14219_at Contig14219 - - 1e+0 At1g04660 glycine-rich protein C.G. S.X.
0.03 2e-1 38 Oryza sativa OsAffx.24758.1.S1_at - - - 0 C.G. S.X.
0.02 3e+0 34 Populus trichocarpa PtpAffx.215147.1.S1_at pmrna29180 chromatin remodeling complex subunit - 2e-51 At5g43530 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein C.G. S.X.
0.03 1e-1 38 Triticum aestivum Ta.6572.2.S1_at BQ172133 - - 1e-10 At3g26060 ATPRX Q C.G. S.X.
0.02 1e-1 36 Vitis vinifera 1617323_at CF373223 hypothetical protein LOC100252590 - 4e-7 At1g55340 unknown protein C.G. S.X.
0.02 8e-1 34 Zea mays Zm.8138.1.A1_at BM336608 tubby protein - 1e-3 At1g25280 AtTLP10 (TUBBY LIKE PROTEIN 10) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
L GO:0007165 The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.
L GO:0045087 Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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