CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g45080

Gene name AtPP2-A6 (Phloem protein 2-A6)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.18 11.4 At5g45080 834539 AtPP2-A6 (Phloem protein 2-A6) F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P S.X. H.G.
0.57 73.8 At4g07820 826263 pathogenesis-related protein, putative F:molecular_function unknown;P:unknown;C:endomembrane system, extracellular region;PMFBO S.X. H.G.
0.57 73.8 At4g08620 826426 SULTR1 High affinity sulfate transporter. Contains STAS domain, essential for sulfur uptake function. Expressed in roots and guard cells. Up-regulated by sulfur deficiency. Down-regulated by cytokinin. Localized to the plasma membrane. S.X. H.G.
0.57 73.8 At5g04730 830351 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.50 65.3 At5g37450 833722 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
146.5 99.9 E-MEXP-828-raw-cel-1156922342
146.5 99.9 E-MEXP-828-raw-cel-1156922923
133.9 99.9 E-MEXP-828-raw-cel-1156922485
112.4 99.9 E-MEXP-828-raw-cel-1156922750
111.8 99.9 E-MEXP-828-raw-cel-1156922509
104.3 99.9 E-MEXP-828-raw-cel-1156922987
101.4 99.9 E-MEXP-828-raw-cel-1156922368
100.0 99.9 E-MEXP-828-raw-cel-1156922829
96.0 99.9 E-MEXP-828-raw-cel-1156922296
86.4 99.9 E-MEXP-828-raw-cel-1156922968
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.19 7e-16 85 At5g45070 834538 AtPP2-A8 (Phloem protein 2-A8) F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P C.G. S.X.
0.03 2e-3 44 At1g09665 837495 Toll-Interleukin-Resistance (TIR) domain-containing protein F:transmembrane receptor activity;P:defense response signaling pathway, resistance gene-dependent, signal transduction, defense response, innate immune response;C:intrinsic to membrane;P C.G. S.X.
0.04 9e-3 42 At4g19925 2745717 disease resistance protein (TIR class), putative F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:membrane;P C.G. S.X.
0.02 9e-3 42 At2g32140 817773 transmembrane receptor F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane, chloroplast;PBO C.G. S.X.
0.04 9e-3 42 At1g65390 842851 ATPP2-A5 (ARABIDOPSIS THALIANA PHLOEM PROTEIN 2 A5) F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane, chloroplast;PB C.G. S.X.
0.02 4e-2 40 At4g19840 827728 ATPP2-A1 encodes a protein similar to phloem lectin in cucumber and celery. Gene is expressed in the phloem, predominantly in the companion cells. C.G. S.X.
0.10 1e-1 38 At5g45090 834541 AtPP2-A7 (Phloem protein 2-A7) F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P C.G. S.X.
0.01 6e-1 36 At4g19530 827695 disease resistance protein (TIR-NBS-LRR class), putative Encodes a TIR-NB-LRR resistance protein. Transient expression in tobacco induces cell death. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 38 Glycine max GmaAffx.57878.2.S1_at BE610836 - - 6e-2 At1g23760 JP630 C.G. S.X.
0.02 4e+0 32 Hordeum vulgare HVSMEb0012O23r2_s_at HVSMEb0012O23r2 - - 6e-1 At5g62440 - C.G. S.X.
0.02 5e+0 34 Oryza sativa OsAffx.30923.1.S1_at - - - 0 C.G. S.X.
0.03 3e+0 34 Populus trichocarpa PtpAffx.222570.1.S1_x_at pmrna40085 hypothetical protein - 8e+0 At5g37473 - C.G. S.X.
0.02 2e-1 38 Triticum aestivum TaAffx.69982.2.A1_at BJ274749 - - 4e+0 At5g48240 unknown protein C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1620022_at CF413848 - - 1e+1 At4g01995 unknown protein C.G. S.X.
0.02 2e+1 30 Zea mays Zm.9314.1.A1_at CK827497 hypothetical protein LOC100192585 - 2e-31 At5g41700 UBC8 (UBIQUITIN CONJUGATING ENZYME 8) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
L GO:0007165 The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.
L GO:0045087 Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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