CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g45070

Gene name AtPP2-A8 (Phloem protein 2-A8)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.74 86.1 At5g45070 834538 AtPP2-A8 (Phloem protein 2-A8) F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P S.X. H.G.
0.72 84.8 At1g78000 844135 SULTR1 Encodes a sulfate transporter that can restore sulfate uptake capacity of a yeast mutant lacking sulfate transporter genes. S.X. H.G.
0.65 79.6 At1g49310 841354 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.63 78.1 At2g28960 817445 leucine-rich repeat protein kinase, putative F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.62 77.3 At2g29995 817550 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.62 77.3 At5g05400 830422 disease resistance protein (CC-NBS-LRR class), putative F:protein binding, ATP binding;P:N-terminal protein myristoylation, defense response, apoptosis;C:chloroplast;PMBOFA S.X. H.G.
0.61 76.7 At5g43520 834372 DC1 domain-containing protein F:unknown;P:unknown;C:unknown;POMF S.X. H.G.
0.60 75.7 At3g24290 822017 AMT1 F:ammonium transmembrane transporter activity;P:ammonium transport, transport;C:endomembrane system, membrane;OBMFPA S.X. H.G.
0.60 75.7 At2g23030 816833 SNRK2.9 (SNF1-RELATED PROTEIN KINASE 2.9) encodes a member of SNF1-related protein kinases (SnRK2) S.X. H.G.
0.60 75.7 At3g54040 824571 photoassimilate-responsive protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
138.0 99.9 GSM265474 Arabidopsis, whole roots, -Fe, 72 hour, rep 2 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
109.3 99.9 GSM265471 Arabidopsis, whole roots, -Fe, 48 hour, rep 1 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
104.3 99.9 GSM265472 Arabidopsis, whole roots, -Fe, 48 hour, rep 2 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
94.4 99.9 GSM265473 Arabidopsis, whole roots, -Fe, 72 hour, rep 1 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
91.8 99.9 GSM184930 Arabidopsis, whole roots, 140 mM NaCl, 1 hour, replicate 2 GSE7642 Time course expression analysis of the salt stress response in Arabidopsis roots
75.7 99.9 GSM184927 Arabidopsis, whole roots, 140 mM NaCl, 30 minutes, replicate 1 GSE7642 Time course expression analysis of the salt stress response in Arabidopsis roots
71.7 99.9 GSM184929 Arabidopsis, whole roots, 140 mM NaCl, 1 hour, replicate 1 GSE7642 Time course expression analysis of the salt stress response in Arabidopsis roots
69.2 99.9 E-MEXP-828-raw-cel-1156922485
68.4 99.9 GSM265432 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
65.1 99.8 GSM131281 AtGen_6-1621_Cold(4°C)-Roots-24.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.19 6e-16 85 At5g45080 834539 AtPP2-A6 (Phloem protein 2-A6) F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P C.G. S.X.
0.07 2e-10 67 At1g65390 842851 ATPP2-A5 (ARABIDOPSIS THALIANA PHLOEM PROTEIN 2 A5) F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane, chloroplast;PB C.G. S.X.
0.09 2e-6 54 At2g32140 817773 transmembrane receptor F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane, chloroplast;PBO C.G. S.X.
0.02 4e-5 50 At2g17060 816211 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV C.G. S.X.
0.05 1e-4 48 At5g44900 834520 transmembrane receptor F:transmembrane receptor activity;P:signal transduction, N-terminal protein myristoylation, defense response, innate immune response;C:intrinsic to membrane;PO C.G. S.X.
0.02 9e-3 42 At5g44870 834517 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA C.G. S.X.
0.03 3e-2 40 At1g57830 842158 Toll-Interleukin-Resistance (TIR) domain-containing protein F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PB C.G. S.X.
0.04 1e-1 38 At5g45090 834541 AtPP2-A7 (Phloem protein 2-A7) F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e+0 34 Glycine max GmaAffx.90075.1.S1_at CF805800 - - 2e-5 At1g48770 unknown protein C.G. S.X.
0.03 4e+0 32 Hordeum vulgare Contig20070_at Contig20070 - - 2e-4 At5g16440 IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1) C.G. S.X.
0.03 1e+0 36 Oryza sativa Os03g0580900 9631.m03682 - - 2e-1 At5g64905 PROPEP3 (Elicitor peptide 3 precursor) C.G. S.X.
0.03 7e-1 36 Populus trichocarpa PtpAffx.212829.1.S1_at pmrna25114 hypothetical protein - 2e+0 At3g20450 - C.G. S.X.
0.03 6e-1 36 Triticum aestivum Ta.4535.1.S1_at BJ267709 - - 2e-1 At5g45070 AtPP2-A8 (Phloem protein 2-A8) C.G. S.X.
0.02 6e-1 34 Vitis vinifera 1618340_at CF517343 - - 4e+0 At4g25040 integral membrane family protein C.G. S.X.
0.02 1e+1 30 Zea mays ZmAffx.721.1.A1_at AI665110 hypothetical protein LOC100274867 - 3e+0 At3g10980 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
L GO:0007165 The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.
L GO:0045087 Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage