Gene omics information

Query gene ID At5g45000
Gene name transmembrane receptor
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5065.3At5g45000834531transmembrane receptorF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBOS.X.H.G.
0.4050.8At4g146103770075-F:unknown;P:unknown;C:unknownS.X.H.G.
0.3338.1At4g25110828614AtMC2 (metacaspase 2)F:cysteine-type endopeptidase activity;P:proteolysis;C:unknown;POMFBVAS.X.H.G.
0.103.4At4g01720828001WRKY47member of WRKY Transcription Factor; Group II-bS.X.H.G.
0.061.4At5g44820834512unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
93.599.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
91.299.9GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
79.199.9GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
71.699.9GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
66.099.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
64.399.8GSM142851MG001_ATH1_A4-Torres-2N1GSE6176Impact of Type III effectors on plant defense responses
56.699.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
54.299.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
52.299.8GSM134423St.Clair_1-120_434_Van-0_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1GSE5756Expression Level Polymorphism Project (ELP) - Van-0
51.499.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.134e-859At1g51270841550structural molecule/ transmembrane receptorF:transmembrane receptor activity, structural molecule activity;P:signal transduction, innate immune response;C:intrinsic to membrane;PMFOC.G.S.X.
0.082e-757At5g44920834522Toll-Interleukin-Resistance (TIR) domain-containing proteinF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:endoplasmic reticulum;PBOC.G.S.X.
0.112e-448At2g03030814832Toll-Interleukin-Resistance (TIR) domain-containing proteinF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBOC.G.S.X.
0.072e-448At2g03300814859Toll-Interleukin-Resistance (TIR) domain-containing proteinF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBC.G.S.X.
0.063e-344At5g44910834521Toll-Interleukin-Resistance (TIR) domain-containing proteinF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PC.G.S.X.
0.011e-242At5g45060834537disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAC.G.S.X.
0.024e-240At5g17880831656CSA1 (constitutive shade-avoidance1)Encodes a TIR-NBS-LRR protein CSA1 that functions in photomorphogenic development. csa1 mutants display a constitutive shade-avoidance (CSA) phenotype (long stem) under high red:far-red rations (i.e. in the absence of a shade signal). csa1 mutation can be complemented by RPS4, a TIR-NBS-LRR protein that confers resistance against bacterium Pseudomonas syringae.C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.034e+034Glycine maxGma.4922.3.A1_atBI969854--2e-4At5g48030GFA2 (GAMETOPHYTIC FACTOR 2)C.G.S.X.
0.033e-136Hordeum vulgareEBma08_SQ004_N18_atEBma08_SQ004_N18--2e-1At5g45000transmembrane receptorC.G.S.X.
0.011e+036Oryza sativaOs01g0867800AK066622.1-HnRNP-L/PTB/hephaestus splicing factor familyprotein8e-1Atmg00410-C.G.S.X.
0.029e-136Populus trichocarpaPtpAffx.207846.1.S1_atpmrna15580hypothetical protein-5e-1At5g49010SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5)C.G.S.X.
0.033e+034Triticum aestivumTa.12999.3.S1_atBG906951--3e+0At5g44060unknown proteinC.G.S.X.
0.023e+032Vitis vinifera1621681_atCB003394--1e-3At2g03030Toll-Interleukin-Resistance (TIR) domain-containing proteinC.G.S.X.
0.021e+034Zea maysZm.4616.2.A1_atCF637845Hypothetical protein LOC100193318-9e-1At3g25980mitotic spindle checkpoint protein, putative (MAD2)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006952Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
LGO:0007165The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.
LGO:0045087Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage