CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g44920

Gene name Toll-Interleukin-Resistance (TIR) domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At5g44920 834522 Toll-Interleukin-Resistance (TIR) domain-containing protein F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:endoplasmic reticulum;PBO S.X. H.G.
0.27 26.2 At1g67030 843022 ZFP6 (ZINC FINGER PROTEIN 6) Encodes a zinc finger protein containing only a single zinc finger. S.X. H.G.
0.25 22.6 At1g44800 841044 nodulin MtN21 family protein F:molecular_function unknown;P:unknown;C:membrane;BOPAM S.X. H.G.
0.22 17.5 At2g04800 815024 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P S.X. H.G.
0.17 10.2 At1g27030 839592 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
41.9 99.8 GSM282693 arf2_brz_1 GSE11216 Brassinazole treatment of arf2 and wild-type dark-grown seedlings
40.0 99.8 GSM282695 arf2_mock_rep2 GSE11216 Brassinazole treatment of arf2 and wild-type dark-grown seedlings
40.0 99.8 GSM134519 Col-0_4day_red illumination_+lincomycin_rep1 GSE5759 red illumination w/o lincomycin
37.9 99.8 GSM218596 Whole roots 3.5hr KNO3 treated then frozen, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
37.8 99.8 GSM131207 AtGen_D-41_3-DS_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
36.9 99.7 GSM184553 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
36.2 99.7 GSM131169 AtGen_D-1_1-DL_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
35.2 99.7 GSM131208 AtGen_D-42_3-FS_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
34.7 99.7 GSM131214 AtGen_D-48_3-WS_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
34.7 99.7 GSM134518 Col-0_4day_red illumination_-lincomycin_rep2 GSE5759 red illumination w/o lincomycin
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.08 1e-7 57 At5g45000 834531 transmembrane receptor F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBO C.G. S.X.
0.04 6e-6 52 At1g60320 842327 Toll-Interleukin-Resistance (TIR) domain-containing protein F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PB C.G. S.X.
0.01 3e-5 50 At5g45230 834559 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV C.G. S.X.
0.02 4e-4 46 At5g17880 831656 CSA1 (constitutive shade-avoidance1) Encodes a TIR-NBS-LRR protein CSA1 that functions in photomorphogenic development. csa1 mutants display a constitutive shade-avoidance (CSA) phenotype (long stem) under high red:far-red rations (i.e. in the absence of a shade signal). csa1 mutation can be complemented by RPS4, a TIR-NBS-LRR protein that confers resistance against bacterium Pseudomonas syringae. C.G. S.X.
0.03 4e-4 46 At1g51270 841550 structural molecule/ transmembrane receptor F:transmembrane receptor activity, structural molecule activity;P:signal transduction, innate immune response;C:intrinsic to membrane;PMFO C.G. S.X.
0.01 2e-2 40 At5g44870 834517 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA C.G. S.X.
0.01 1e-1 38 At5g04895 830371 ATP binding / ATP-dependent helicase/ double-stranded RNA binding / helicase/ nucleic acid binding F:double-stranded RNA binding, helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:biological_process unknown;C:mitochondrion, intracellular;BMOFPV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Glycine max GmaAffx.80066.2.S1_at BF598100 - - 1e-2 At4g13640 UNE16 (unfertilized embryo sac 16) C.G. S.X.
0.03 3e+0 32 Hordeum vulgare HVSMEb0010O13f2_at HVSMEb0010O13f2 - - 3e+0 At5g44920 Toll-Interleukin-Resistance (TIR) domain-containing protein C.G. S.X.
0.03 1e+1 32 Oryza sativa OsAffx.32288.1.A1_at - - - 0 C.G. S.X.
0.03 5e-1 36 Populus trichocarpa PtpAffx.79920.1.A1_at CK090376 hypothetical protein - 1e+0 At5g59845 gibberellin-regulated family protein C.G. S.X.
0.03 2e+0 34 Triticum aestivum Ta.26251.1.S1_at CD491705 - - 4e-1 At4g09153 LCR36 (Low-molecular-weight cysteine-rich 36) C.G. S.X.
0.03 4e-1 34 Vitis vinifera 1621616_at CB342121 hypothetical protein LOC100248502 - 1e+0 At2g20616 unknown protein C.G. S.X.
0.02 3e+0 32 Zea mays Zm.9130.1.A1_at BM268570 - - 7e-2 At3g62220 serine/threonine protein kinase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
L GO:0007165 The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.
L GO:0045087 Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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