CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g44910

Gene name Toll-Interleukin-Resistance (TIR) domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.61 76.7 At5g44910 834521 Toll-Interleukin-Resistance (TIR) domain-containing protein F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P S.X. H.G.
1.00 100.0 At2g44370 819044 DC1 domain-containing protein F:unknown;P:unknown;C:unknown;POMF S.X. H.G.
0.89 94.6 At3g55150 824681 ATEXO70H1 (exocyst subunit EXO70 family protein H1) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. S.X. H.G.
0.80 89.8 At1g51850 841612 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA S.X. H.G.
0.61 76.7 At2g39200 818505 MLO12 (MILDEW RESISTANCE LOCUS O 12) A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO6 belongs to the clade IV, with AtMLO2, AtMLO3 and AtMLO12. The gene is expressed during early seedling growth, in root tips and cotyledon vascular system, in floral organs (anthers and stigma), and in fruit abscission zone, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
168.5 100.0 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
135.8 99.9 GSM142852 MG001_ATH1_A5-Torres-2N3 GSE6176 Impact of Type III effectors on plant defense responses
119.5 99.9 E-MEXP-1094-raw-cel-1379507313
109.1 99.9 E-MEXP-807-raw-cel-1173272948
103.5 99.9 GSM142851 MG001_ATH1_A4-Torres-2N1 GSE6176 Impact of Type III effectors on plant defense responses
100.8 99.9 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
99.3 99.9 E-MEXP-807-raw-cel-1173273116
80.8 99.9 E-MEXP-1094-raw-cel-1379507273
77.3 99.9 GSM142853 MG001_ATH1_A6-Torres-2N6 GSE6176 Impact of Type III effectors on plant defense responses
74.3 99.9 E-MEXP-807-raw-cel-1173273060
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.06 1e-3 44 At5g45000 834531 transmembrane receptor F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBO C.G. S.X.
0.01 9e-2 38 At4g21380 827890 ARK3 (A. THALIANA RECEPTOR KINASE 3) encodes a putative receptor-like serine/threonine protein kinases that is similar to Brassica self-incompatibility (S) locus. Expressed in root. Shoot expression limited to limited to the root-hypocotyl transition zone and at the base of lateral roots as well as in axillary buds, and pedicels. C.G. S.X.
0.01 4e-1 36 At1g27900 839683 RNA helicase, putative F:in 7 functions;P:biological_process unknown;C:cellular_component unknown;MBOVFPA C.G. S.X.
0.02 1e+0 34 At5g44920 834522 Toll-Interleukin-Resistance (TIR) domain-containing protein F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:endoplasmic reticulum;PBO C.G. S.X.
0.01 1e+0 34 At5g58830 836000 identical protein binding / serine-type endopeptidase F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM C.G. S.X.
0.01 1e+0 34 At5g58820 835999 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM C.G. S.X.
0.02 1e+0 34 At4g19925 2745717 disease resistance protein (TIR class), putative F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:membrane;P C.G. S.X.
0.02 1e+0 34 At4g00980 827935 zinc knuckle (CCHC-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PMF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Glycine max HgAffx.13083.1.S1_at CB374900 - - 9e-1 At5g44910 Toll-Interleukin-Resistance (TIR) domain-containing protein C.G. S.X.
0.03 2e-1 36 Hordeum vulgare Contig6291_at Contig6291 - - 9e-8 At1g77370 glutaredoxin, putative C.G. S.X.
0.03 7e-1 36 Oryza sativa Os.48730.1.S1_s_at - - - 0 C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.202617.1.S1_at pmrna5234 hypothetical protein - 2e-5 At5g26570 ATGWD3 C.G. S.X.
0.03 2e+0 34 Triticum aestivum Ta.5656.2.S1_at BJ281859 - - 1e+0 At3g53650 histone H2B, putative C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1612509_at BQ792148 polygalacturonase - 5e-6 At5g14650 polygalacturonase, putative / pectinase, putative C.G. S.X.
0.03 1e+1 30 Zea mays ZmAffx.83.1.A1_at AI665302 hypothetical protein LOC100277826 - 8e-1 At5g06290 2-Cys Prx B (2-Cysteine peroxiredoxin B) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
L GO:0007165 The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.
L GO:0045087 Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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