Gene omics information

Query gene ID At5g44910
Gene name Toll-Interleukin-Resistance (TIR) domain-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6176.7At5g44910834521Toll-Interleukin-Resistance (TIR) domain-containing proteinF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PS.X.H.G.
1.00100.0At2g44370819044DC1 domain-containing proteinF:unknown;P:unknown;C:unknown;POMFS.X.H.G.
0.8994.6At3g55150824681ATEXO70H1 (exocyst subunit EXO70 family protein H1)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.S.X.H.G.
0.8089.8At1g51850841612leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVAS.X.H.G.
0.6176.7At2g39200818505MLO12 (MILDEW RESISTANCE LOCUS O 12)A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO6 belongs to the clade IV, with AtMLO2, AtMLO3 and AtMLO12. The gene is expressed during early seedling growth, in root tips and cotyledon vascular system, in floral organs (anthers and stigma), and in fruit abscission zone, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
168.5100.0GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
135.899.9GSM142852MG001_ATH1_A5-Torres-2N3GSE6176Impact of Type III effectors on plant defense responses
119.599.9E-MEXP-1094-raw-cel-1379507313
109.199.9E-MEXP-807-raw-cel-1173272948
103.599.9GSM142851MG001_ATH1_A4-Torres-2N1GSE6176Impact of Type III effectors on plant defense responses
100.899.9GSM13784Cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
99.399.9E-MEXP-807-raw-cel-1173273116
80.899.9E-MEXP-1094-raw-cel-1379507273
77.399.9GSM142853MG001_ATH1_A6-Torres-2N6GSE6176Impact of Type III effectors on plant defense responses
74.399.9E-MEXP-807-raw-cel-1173273060
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Homologous genes



Paralogous genes



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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.061e-344At5g45000834531transmembrane receptorF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBOC.G.S.X.
0.019e-238At4g21380827890ARK3 (A. THALIANA RECEPTOR KINASE 3)encodes a putative receptor-like serine/threonine protein kinases that is similar to Brassica self-incompatibility (S) locus. Expressed in root. Shoot expression limited to limited to the root-hypocotyl transition zone and at the base of lateral roots as well as in axillary buds, and pedicels.C.G.S.X.
0.014e-136At1g27900839683RNA helicase, putativeF:in 7 functions;P:biological_process unknown;C:cellular_component unknown;MBOVFPAC.G.S.X.
0.021e+034At5g44920834522Toll-Interleukin-Resistance (TIR) domain-containing proteinF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:endoplasmic reticulum;PBOC.G.S.X.
0.011e+034At5g58830836000identical protein binding / serine-type endopeptidaseF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAMC.G.S.X.
0.011e+034At5g58820835999subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAMC.G.S.X.
0.021e+034At4g199252745717disease resistance protein (TIR class), putativeF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:membrane;PC.G.S.X.
0.021e+034At4g00980827935zinc knuckle (CCHC-type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PMFC.G.S.X.
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Orthologous genes



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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e+034Glycine maxHgAffx.13083.1.S1_atCB374900--9e-1At5g44910Toll-Interleukin-Resistance (TIR) domain-containing proteinC.G.S.X.
0.032e-136Hordeum vulgareContig6291_atContig6291--9e-8At1g77370glutaredoxin, putativeC.G.S.X.
0.037e-136Oryza sativaOs.48730.1.S1_s_at---0C.G.S.X.
0.032e+034Populus trichocarpaPtpAffx.202617.1.S1_atpmrna5234hypothetical protein-2e-5At5g26570ATGWD3C.G.S.X.
0.032e+034Triticum aestivumTa.5656.2.S1_atBJ281859--1e+0At3g53650histone H2B, putativeC.G.S.X.
0.032e+032Vitis vinifera1612509_atBQ792148polygalacturonase-5e-6At5g14650polygalacturonase, putative / pectinase, putativeC.G.S.X.
0.031e+130Zea maysZmAffx.83.1.A1_atAI665302hypothetical protein LOC100277826-8e-1At5g062902-Cys Prx B (2-Cysteine peroxiredoxin B)C.G.S.X.
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Biological processes



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ECCGO IDProcess Name
CGO:0006952Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
LGO:0007165The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.
LGO:0045087Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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