Gene omics information

Query gene ID At5g44710
Gene name -
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5570.6At5g44710834500-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FPMOS.X.H.G.
0.4761.2At1g14620838024DECOY (DECOY)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMPOBS.X.H.G.
0.3846.7At5g56940835796ribosomal protein S16 family proteinF:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular;BOPMFS.X.H.G.
0.3338.1At1g07830837298ribosomal protein L29 family proteinF:structural constituent of ribosome;P:translation;C:mitochondrion, ribosome, mitochondrial ribosome, intracellular;MFOPS.X.H.G.
0.3338.1At5g09770830837ribosomal protein L17 family proteinF:structural constituent of ribosome;P:translation;C:ribosome, intracellular;BOFMPS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
33.799.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
29.299.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
28.999.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
21.699.6GSM252669Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 0 hrs Taking 70 mm of Stump (4dpg) rep3GSE9996Organ regeneration in plants is independent of stem cell niche activity
21.299.6GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
20.699.6GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
20.199.6GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.499.5GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
17.399.5GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
16.899.5GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.021e-136At4g13930827027SHM4 (serine hydroxymethyltransferase 4)Encodes a serine hydroxymethyltransferase maximally expressed in rootC.G.S.X.
0.011e-136At3g48770824038ATP binding / DNA bindingF:DNA binding, ATP binding;P:biological_process unknown;C:chloroplast;PMBOFAC.G.S.X.
0.016e-134At5g11490831021adaptin family proteinF:protein transporter activity, protein binding, binding;P:intracellular protein transport, vesicle-mediated transport, protein transport;C:membrane coat, clathrin adaptor complex;MFOPC.G.S.X.
0.026e-134At4g26440828750WRKY34 (WRKY DNA-BINDING PROTEIN 34)member of WRKY Transcription Factor; Group IC.G.S.X.
0.016e-134At1g72300843562leucine-rich repeat transmembrane protein kinase, putativeEncodes a leucine-rich repeat receptor kinase (LRR-RK) involved in the perception of PSY1. PSY1 is an 18-aa tyrosine-sulfated glycopeptide encoded by AT5G58650 that promotes cellular proliferation and expansion.C.G.S.X.
0.022e+032At5g35735833550auxin-responsive family proteinF:unknown;P:unknown;C:plasma membrane, membrane;PMFOBC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.179e-444Glycine maxGma.9994.2.S1_a_atCD402259--7e-4At5g44710-C.G.S.X.
0.054e+030Hordeum vulgareContig1519_s_atContig1519--3e-2At4g19100unknown proteinC.G.S.X.
0.055e+032Oryza sativaOsAffx.15918.1.S1_at---0C.G.S.X.
0.078e-134Populus trichocarpaPtpAffx.207563.1.S1_atpmrna15013hypothetical protein-4e-1At5g44710-C.G.S.X.
0.062e+032Triticum aestivumTaAffx.83746.1.S1_atCA652379--2e+0At5g44710-C.G.S.X.
0.047e-132Vitis vinifera1617745_atCF372303hypothetical protein LOC100256638-5e+0At5g44710-C.G.S.X.
0.054e+030Zea maysZmAffx.715.1.S1_atAI739762--2e-1At1g04670unknown proteinC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage