CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g44580

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At5g44580 834486 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.50 65.3 At1g31580 840047 ECS1 Encodes cell wall protein. ECS1 is not a Xcc750 resistance gene, but the genetic data indicate that ECS1 is linked to a locus influencing resistance to Xcc750. S.X. H.G.
0.40 50.8 At3g14210 820639 ESM1 (epithiospecifier modifier 1) A semidominant QTL which has an epistatic effect on the Epithiospecifier gene. Represses nitrile formation and favors isothiocyanate production during glucosinolate hydrolysis. The functional allele deters the insect herbivory T. ni. S.X. H.G.
0.22 17.5 At2g23590 816891 MES8 (METHYL ESTERASE 8) Encodes a protein shown to have carboxylesterase activity in vitro. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro. S.X. H.G.
0.08 2.3 At3g44630 823589 disease resistance protein RPP1-WsB-like (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:N-terminal protein myristoylation, defense response;C:intrinsic to membrane;PMBOFAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
24.0 99.6 GSM173445 oxt6 mutant, biological rep1 GSE7211 A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
22.5 99.6 GSM173442 wild-type Arabidopsis, biological rep1 GSE7211 A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
19.2 99.6 E-ATMX-31-raw-cel-1516947950
17.1 99.5 GSM142833 MG001_ATH1_A10-Torres-5N1 GSE6176 Impact of Type III effectors on plant defense responses
16.8 99.5 GSM173447 oxt6 mutant, biological rep3 GSE7211 A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
16.3 99.5 GSM173444 wild-type Arabidopsis, biological rep3 GSE7211 A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
16.1 99.5 GSM142835 MG001_ATH1_A13-Torres-4N1 GSE6176 Impact of Type III effectors on plant defense responses
15.6 99.5 GSM142840 MG001_ATH1_A1-Torres-1N1 GSE6176 Impact of Type III effectors on plant defense responses
14.3 99.4 GSM173443 wild-type Arabidopsis, biological rep2 GSE7211 A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
13.6 99.4 E-MEXP-1454-raw-cel-1585858035
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.50 6e-13 73 At5g44582 5008301 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.02 6e-1 34 At5g20470 832169 myosin, putative F:motor activity;P:biological_process unknown;C:cellular_component unknown;MOBFPAV C.G. S.X.
0.03 6e-1 34 At2g40220 818614 ABI4 (ABA INSENSITIVE 4) encodes a member of the DREB subfamily A-3 of ERF/AP2 transcription factor family (ABI4). The protein contains one AP2 domain. There is only one member in this family. Involved in abscisic acid (ABA) signal transduction, ABA-mediated glucose response, and hexokinase-dependent sugar responses. Expressed most abundantly in developing siliques and to a lesser degree in seedlings. C.G. S.X.
0.01 6e-1 34 At1g17210 838292 zinc ion binding F:zinc ion binding;P:unknown;C:cytosol, nucleus, phragmoplast;OMPFBA C.G. S.X.
0.03 2e+0 32 Atcg00530 - - hypothetical protein C.G. S.X.
0.02 2e+0 32 At5g37540 833732 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PFOM C.G. S.X.
0.03 2e+0 32 At5g65420 836667 CYCD4 Encodes a D-type cyclin CYCD4;1 that physically interacts with CDC2A and is expressed during vascular tissue development, embryogenesis, and formation of lateral root primordia. Its expression is upregulated early during germination.Involved in stomatal cell lineage proliferation in the hypocotyl. C.G. S.X.
0.01 2e+0 32 At3g58770 825046 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.02 2e+0 32 At3g56080 824774 dehydration-responsive protein-related F:unknown;P:biological_process unknown;C:cellular_component unknown;PBOMF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 2e-1 36 Glycine max HgAffx.3839.1.A1_at CK348851 - - 3e+0 At5g44580 unknown protein C.G. S.X.
0.04 3e-1 34 Hordeum vulgare HV03I17u_at HV03I17u - - 1e+0 At5g44580 unknown protein C.G. S.X.
0.05 2e+1 30 Oryza sativa OsAffx.31510.1.S1_at - - - 0 C.G. S.X.
0.04 8e-1 34 Populus trichocarpa PtpAffx.101048.1.A1_at CV281632 - - 7e-2 At1g11700 unknown protein C.G. S.X.
0.05 2e+0 32 Triticum aestivum TaAffx.16483.1.S1_at BE492194 - - 3e+0 At5g44580 unknown protein C.G. S.X.
0.04 3e+0 30 Vitis vinifera 1614456_at BQ797488 hypothetical protein LOC100247088 - 1e-15 At1g05500 NTMC2T2.1 C.G. S.X.
0.04 4e+0 30 Zea mays ZmAffx.1173.1.A1_at AW787668 - - 3e+0 At3g47800 aldose 1-epimerase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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