Gene omics information

Query gene ID At5g44340
Gene name TUB4
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3133.8At5g44340834459TUB4beta tubulin geneS.X.H.G.
0.8894.0At1g33250840219fringe-related proteinF:transferase activity, transferring glycosyl groups;P:unknown;C:chloroplast, membrane;MPFOS.X.H.G.
0.7888.6At4g00720828023ATSK32 (SHAGGY-LIKE PROTEIN KINASE 32)F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytosol;MOPFBVAS.X.H.G.
0.7687.4At1g71410843482protein kinase family proteinF:binding, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:membrane;MOFPBVAS.X.H.G.
0.7687.4At5g23670832432LCB2Encodes the LCB2 subunit of serine palmitoyltransferase, an enzyme involved in sphingosine biosynthesis. The protein is localized to the endoplasmic reticulum.S.X.H.G.
0.7486.1At5g64920836616CIP8 (COP1-INTERACTING PROTEIN 8)Encodes a RING-H2 protein that interacts with the RING finger domain of COP1. CIP8 exhibits a strong interaction with the E2 ubiquitin conjugating enzyme AtUBC8 through its N-terminal domain and promotes ubiquitination in an E2-dependent fashion in vitro. It is possible that the AtUBC8-CIP8 module might interact with COP1 in vivo, thereby participating in proteasome-mediated degradation of HY5.S.X.H.G.
0.6781.6At1g06890837199transporter-relatedF:unknown;P:unknown;C:Golgi apparatus, membrane;PMFOBAS.X.H.G.
0.6781.6At5g54310835519AGD5 (ARF-GAP domain 5)A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.S.X.H.G.
0.6478.9At2g43790818982ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)Encodes a MAP kinase induced by pathogens, ethylene biosynthesis, oxidative stress and osmotic stress.Also involved in ovule development. Homozygous mutants in a MPK3 heterozygous background are female sterile due to defects in integument development.S.X.H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
6.198.5GSM154508Arabidopsis growing pollen tubes rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
5.898.4GSM133949Murray_2-5_T8-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
5.798.4GSM292080pif1-2, dark sample, biological rep2GSE11594Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.8601283At4g20890827837TUB9tubulin 9C.G.S.X.
0.720724At5g23860832451TUB8beta-tubulin, preferentially expressed in endodermal and phloem cells of primary roots and in the vascular tissues of leaves, stems, and flowers.C.G.S.X.
0.739e-176617At5g62700836391TUB3encodes tubulin beta-2/beta-3 chainC.G.S.X.
0.732e-173609At5g62690836390TUB2encodes tubulin beta-2/beta-3 chainC.G.S.X.
0.702e-158559At5g12250831100TUB6 (BETA-6 TUBULIN)Encodes a beta-tubulin. Expression of TUB6 has been shown to decrease in response to cold treatment.C.G.S.X.
0.754e-135482At1g20010838590TUB5beta tubulinC.G.S.X.
0.722e-115416At1g75780843911TUB1beta tubulin gene downregulated by phytochrome A (phyA)-mediated far-red light high-irradiance and the phytochrome B (phyB)-mediated red light high-irradiance responsesC.G.S.X.
0.664e-110398At2g29550817504TUB7Encodes a beta-tubulin that is expressed in leaves, roots and flowers.C.G.S.X.
0.027e-446At5g66540836786-F:molecular_function unknown;P:rRNA processing;C:cytosol, nucleolus, nucleus;MOFBPVAC.G.S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.645e-169595Glycine maxGma.5502.1.S1_atCD417859beta-tubulin-5e-169At5g44340TUB4C.G.S.X.
0.645e-77287Hordeum vulgareContig1506_s_atContig1506--8e-96At5g23860TUB8C.G.S.X.
0.598e-141502Oryza sativaOs06g0671900AK069237.1-Beta-tubulin0At5g62690TUB2C.G.S.X.
0.632e-146519Populus trichocarpaPtpAffx.1704.4.S1_a_atCV233101tubulin, beta chain-8e-177At5g23860TUB8C.G.S.X.
0.577e-109395Triticum aestivumTa.1544.1.S1_atBJ264595beta-tubulin 2-0At5g12250TUB6 (BETA-6 TUBULIN)C.G.S.X.
0.592e-174611Vitis vinifera1620596_atBQ797727hypothetical protein LOC100259534-5e-174At5g44340TUB4C.G.S.X.
0.622e-119428Zea maysZm.16988.1.A1_atL10634.1beta-7 tubulin-4e-117At5g23860TUB8C.G.S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0007017Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins.
LGO:0007018Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins.
LGO:0051258The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage