Gene omics information

Query gene ID At5g44340
Gene name TUB4
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3133.8At5g44340834459TUB4beta tubulin geneS.X.H.G.
0.8894.0At1g33250840219fringe-related proteinF:transferase activity, transferring glycosyl groups;P:unknown;C:chloroplast, membrane;MPFOS.X.H.G.
0.7888.6At4g00720828023ATSK32 (SHAGGY-LIKE PROTEIN KINASE 32)F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytosol;MOPFBVAS.X.H.G.
0.7687.4At1g71410843482protein kinase family proteinF:binding, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:membrane;MOFPBVAS.X.H.G.
0.7687.4At5g23670832432LCB2Encodes the LCB2 subunit of serine palmitoyltransferase, an enzyme involved in sphingosine biosynthesis. The protein is localized to the endoplasmic reticulum.S.X.H.G.
0.7486.1At5g64920836616CIP8 (COP1-INTERACTING PROTEIN 8)Encodes a RING-H2 protein that interacts with the RING finger domain of COP1. CIP8 exhibits a strong interaction with the E2 ubiquitin conjugating enzyme AtUBC8 through its N-terminal domain and promotes ubiquitination in an E2-dependent fashion in vitro. It is possible that the AtUBC8-CIP8 module might interact with COP1 in vivo, thereby participating in proteasome-mediated degradation of HY5.S.X.H.G.
0.6982.9At5g32440833203-F:unknown;P:unknown;C:chloroplast;OPMFBS.X.H.G.
0.6781.6At1g06890837199transporter-relatedF:unknown;P:unknown;C:Golgi apparatus, membrane;PMFOBAS.X.H.G.
0.6781.6At5g54310835519AGD5 (ARF-GAP domain 5)A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.S.X.H.G.
0.6478.9At2g43790818982ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)Encodes a MAP kinase induced by pathogens, ethylene biosynthesis, oxidative stress and osmotic stress.Also involved in ovule development. Homozygous mutants in a MPK3 heterozygous background are female sterile due to defects in integument development.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
6.298.6E-MEXP-1797-raw-cel-1669768012
6.198.5GSM154508Arabidopsis growing pollen tubes rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
6.198.5E-MEXP-285-raw-cel-440782791
5.998.5E-ATMX-35-raw-cel-1574334864
5.998.5E-ATMX-35-raw-cel-1574334880
5.898.4GSM133949Murray_2-5_T8-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
5.898.4E-MEXP-1797-raw-cel-1669767949
5.798.4GSM292080pif1-2, dark sample, biological rep2GSE11594Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
5.698.4E-MEXP-285-raw-cel-440782725
5.598.3E-ATMX-31-raw-cel-1516947899
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.8601283At4g20890827837TUB9tubulin 9C.G.S.X.
0.720724At5g23860832451TUB8beta-tubulin, preferentially expressed in endodermal and phloem cells of primary roots and in the vascular tissues of leaves, stems, and flowers.C.G.S.X.
0.739e-176617At5g62700836391TUB3encodes tubulin beta-2/beta-3 chainC.G.S.X.
0.732e-173609At5g62690836390TUB2encodes tubulin beta-2/beta-3 chainC.G.S.X.
0.702e-158559At5g12250831100TUB6 (BETA-6 TUBULIN)Encodes a beta-tubulin. Expression of TUB6 has been shown to decrease in response to cold treatment.C.G.S.X.
0.754e-135482At1g20010838590TUB5beta tubulinC.G.S.X.
0.722e-115416At1g75780843911TUB1beta tubulin gene downregulated by phytochrome A (phyA)-mediated far-red light high-irradiance and the phytochrome B (phyB)-mediated red light high-irradiance responsesC.G.S.X.
0.664e-110398At2g29550817504TUB7Encodes a beta-tubulin that is expressed in leaves, roots and flowers.C.G.S.X.
0.027e-446At5g66540836786-F:molecular_function unknown;P:rRNA processing;C:cytosol, nucleolus, nucleus;MOFBPVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.645e-169595Glycine maxGma.5502.1.S1_atCD417859beta-tubulin-5e-169At5g44340TUB4C.G.S.X.
0.645e-77287Hordeum vulgareContig1506_s_atContig1506--8e-96At5g23860TUB8C.G.S.X.
0.598e-141502Oryza sativaOs06g0671900AK069237.1-Beta-tubulin0At5g62690TUB2C.G.S.X.
0.632e-146519Populus trichocarpaPtpAffx.1704.4.S1_a_atCV233101tubulin, beta chain-8e-177At5g23860TUB8C.G.S.X.
0.577e-109395Triticum aestivumTa.1544.1.S1_atBJ264595beta-tubulin 2-0At5g12250TUB6 (BETA-6 TUBULIN)C.G.S.X.
0.592e-174611Vitis vinifera1620596_atBQ797727hypothetical protein LOC100259534-5e-174At5g44340TUB4C.G.S.X.
0.622e-119428Zea maysZm.16988.1.A1_atL10634.1beta-7 tubulin-4e-117At5g23860TUB8C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0007017Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins.
LGO:0007018Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins.
LGO:0051258The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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