Gene omics information

Query gene ID At5g44330
Gene name male sterility MS5 family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g44330834458male sterility MS5 family proteinF:binding;P:biological_process unknown;C:unknown;POBAS.X.H.G.
0.9296.0At3g28280822454-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.9095.1At1g29730839851ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseF:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAS.X.H.G.
0.8894.0At4g02970828121AT7SL-1 (Arabidopsis 7SL RNA 1)Signal recognition particle. Type 4 of RNA polymerase III dependent genes.S.X.H.G.
0.8693.1At2g13640815849Golgi GDP mannose transporter (GONST1)F:unknown;P:transcription;C:nucleus;OMBPFVAS.X.H.G.
0.8592.4At5g26620832728unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.8592.4At1g52430841674ubiquitin carboxyl-terminal hydrolase-relatedF:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;POBMFS.X.H.G.
0.8592.4At4g25510828655unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.8391.4At4g21950828284unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.8391.4At4g220653769974transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
409.7100.0GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
404.9100.0GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
381.4100.0GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
337.5100.0GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
320.0100.0GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
307.1100.0GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
299.1100.0GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
256.7100.0GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
255.1100.0GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
253.1100.0GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.246e-32139At4g20900827838MS5 (MALE-STERILE 5)ms5 mutants are male sterile, pollen tetrads undergo an extra round of division after meiosis II without chromosome replication, resulting in chromosome abnormalities. Gene product has some similarity to SCP1, a rat synaptonemal complex protein.C.G.S.X.
0.042e-757At3g51280824291male sterility MS5, putativeF:binding;P:unknown;C:cellular_component unknown;OBPAFC.G.S.X.
0.038e-756At5g48850834943ATSDI1 (SULPHUR DEFICIENCY-INDUCED 1)homologous to the wheat sulphate deficiency-induced gene sdi1. Expression in root and leaf is induced by sulfur starvation. Knockout mutants retained higher root and leaf sulfate concentrations, indicating a role in regulation of stored sulfate pools.C.G.S.X.
0.031e-242At1g04770839418male sterility MS5 family proteinF:binding;P:biological_process unknown;C:unknown;POBC.G.S.X.
0.027e-136At4g40030830164histone H3.2F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MFPOC.G.S.X.
0.017e-136At4g09680826554unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.024e+034Glycine maxPsAffx.C152000003_atPsAffx.C152000003--2e+0At1g09815POLD4 (POLYMERASE DELTA 4)C.G.S.X.
0.025e+032Hordeum vulgareHVSMEl0002K19r2_atHVSMEl0002K19r2--7e+0At4g31790diphthine synthase, putative (DPH5)C.G.S.X.
0.011e+036Oryza sativaOsAffx.26553.2.S1_at---0C.G.S.X.
0.082e-861Populus trichocarpaPtpAffx.203070.1.S1_s_atpmrna6077hypothetical protein-1e-50At3g51280male sterility MS5, putativeC.G.S.X.
0.023e+034Triticum aestivumTa.16004.1.S1_atCA593852--2e+0Atmg00690-C.G.S.X.
0.071e-240Vitis vinifera1617222_atCD013418hypothetical protein LOC100244941-1e-11At1g04770male sterility MS5 family proteinC.G.S.X.
0.021e-344Zea maysZm.6405.1.A1_atCF630763LOL1-3e-2At1g32540LOL1 (LSD ONE LIKE 1)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage