CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g44310

Gene name late embryogenesis abundant domain-containing protein / LEA domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g44310 834454 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:unknown;P:embryonic development ending in seed dormancy;C:unknown;OMBFPAV S.X. H.G.
1.00 100.0 At2g36640 818236 ATECP63 (EMBRYONIC CELL PROTEIN 63) Encodes putative phosphotyrosine protein belonging to late embryogenesis abundant (LEA) protein in group 3 that might be involved in maturation and desiccation tolerance of seeds. RFLP and CAPS mapping place it on chromosome 4 but the nucleotide sequence maps it to chromosome 2. S.X. H.G.
0.91 95.6 At2g40170 818608 GEA6 (LATE EMBRYOGENESIS ABUNDANT 6) Encodes a group 1 LEA gene that is activated by direct binding of ABI5 to its promoter and is involved in response to ABA. Is required for normal seed development. Involved in regulating the timing of dessication tolerance and rate of water loss during seed maturation. S.X. H.G.
0.80 89.8 At3g53040 824470 late embryogenesis abundant protein, putative / LEA protein, putative F:unknown;P:embryonic development ending in seed dormancy;C:unknown;MBOFPAV S.X. H.G.
0.77 88.0 At5g07330 830624 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P S.X. H.G.
0.50 65.3 At5g62490 836369 ATHVA22B Part of the AtHVA22 family. Protein expression is ABA- and stress-inducible. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
447.2 100.0 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
322.0 100.0 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
182.0 100.0 GSM134313 Penfield_1-15_embryo-ABA_Rep3_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
175.3 100.0 GSM134302 Penfield_1-4_endosperm-ABA_Rep1_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
174.2 100.0 E-MEXP-849-raw-cel-1181980982
164.4 100.0 GSM131701 ATGE_82_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
156.6 99.9 GSM131704 ATGE_83_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
155.4 99.9 GSM131702 ATGE_82_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
151.6 99.9 GSM131705 ATGE_83_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
145.4 99.9 GSM131707 ATGE_84_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.23 5e-10 65 At4g21020 827849 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:unknown;P:embryonic development ending in seed dormancy;C:unknown;OMBPFVA C.G. S.X.
0.02 7e-3 42 At2g35170 818084 MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBPF C.G. S.X.
0.03 1e-1 38 At1g48300 841250 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POMBF C.G. S.X.
0.01 4e-1 36 At5g24060 832471 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBV C.G. S.X.
0.01 4e-1 36 At4g35310 829685 CPK5 (calmodulin-domain protein kinase 5) calmodulin-domain protein kinase CDPK isoform 5 (CPK5) C.G. S.X.
0.03 4e-1 36 At3g04945 3768872 LCR18 (Low-molecular-weight cysteine-rich 18) Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family. C.G. S.X.
0.01 4e-1 36 At3g52970 824463 CYP76G1 member of CYP76G C.G. S.X.
0.01 4e-1 36 At2g17290 816235 CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6) Encodes calcium dependent protein kinase 6 (CPK6), a member of the Arabidopsis CDPK gene family. CDPKs contain an intrinsic Ca2+-activation domain with four EF hand Ca2+-binding sites. CDPKs protein kinases have been proposed to function in multiple plant signal transduction pathways downstream of [Ca2+]cyt elevations, thus transducing various physiological responses. CPK6 is expressed in both guard cells and mesophyll cells. Functions in guard cell ion channel regulation. ABA and Ca(2+) activation of slow-type anion channels and, interestingly, ABA activation of plasma membrane Ca(2+)-permeable channels were impaired in independent alleles of single and double cpk3cpk6 mutant guard cells. Furthermore, ABA- and Ca(2+)-induced stomatal closing were partially impaired in these cpk3cpk6 mutant alleles. CPK3 is also a member of the Arabidopsis CDPK family. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Glycine max GmaAffx.92282.1.S1_at CF808007 - - 6e-8 At2g47720 - C.G. S.X.
0.03 3e+0 32 Hordeum vulgare HU14N23u_s_at HU14N23u - - 9e-2 At4g04423 endo-1,3(4)-beta-glucanase C.G. S.X.
0.03 3e+0 34 Oryza sativa OsAffx.19872.1.S1_at - - - 0 C.G. S.X.
0.06 2e-4 48 Populus trichocarpa Ptp.4015.1.S1_at BU861455 - - 9e-5 At5g44310 late embryogenesis abundant domain-containing protein / LEA domain-containing protein C.G. S.X.
0.03 3e-2 40 Triticum aestivum TaAffx.107534.1.S1_at CA698311 - - 1e-2 At5g44310 late embryogenesis abundant domain-containing protein / LEA domain-containing protein C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1620635_at CA818588 - - 6e-2 At1g73030 VPS46.2 C.G. S.X.
0.03 3e+0 32 Zea mays Zm.3673.1.A1_at AW037200 - - 6e-21 At1g14000 VIK (VH1-INTERACTING KINASE) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0009793 The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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