Gene omics information

Query gene ID At5g44280
Gene name RING1A (RING 1A)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.8290.9At5g44280834451RING1A (RING 1A)Encodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1b, a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression.S.X.H.G.
0.3745.0At4g00980827935zinc knuckle (CCHC-type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PMFS.X.H.G.
0.3541.6At2g20400816559myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POS.X.H.G.
0.3338.1At5g22820832345bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MPS.X.H.G.
0.2319.3At1g74400843781pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMBS.X.H.G.
0.2319.3At2g47310819344flowering time control protein-related / FCA gamma-relatedF:protein binding, RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MPFOBS.X.H.G.
0.2319.3At5g17570831623tatD-related deoxyribonuclease family proteinF:endodeoxyribonuclease activity, producing 5'-phosphomonoesters, deoxyribonuclease activity;P:biological_process unknown;C:cellular_component unknown;BOMFAPS.X.H.G.
0.2319.3At4g13330826963unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOS.X.H.G.
0.2014.4At1g32610840156hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOVBS.X.H.G.
0.2014.4At2g20210816540leucine-rich repeat family proteinF:protein binding;P:unknown;C:endomembrane system;MOPBFS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
260.0100.0GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
153.799.9GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
141.099.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
134.299.9GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
129.999.9GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
125.699.9GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibition
122.199.9GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
121.399.9GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
120.099.9GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
115.999.9GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.408e-75282At1g03770839413RING1B (RING 1B)Encodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1a, a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression.C.G.S.X.
0.031e-242At2g46680819280ATHB-7 (ARABIDOPSIS THALIANA HOMEOBOX 7)encodes a putative transcription factor that contains a homeodomain closely linked to a leucine zipper motif. Transcript is detected in all tissues examined. Is transcriptionally regulated in an ABA-dependent manner and may act in a signal transduction pathway which mediates a drought response.C.G.S.X.
0.015e-240At4g28620828980ATM2 (ABC TRANSPORTER OF THE MITOCHONDRION 2)half-molecule ABC transporter ATM2C.G.S.X.
0.025e-240At3g01260821171aldose 1-epimerase/ carbohydrate binding / catalytic/ isomeraseF:carbohydrate binding, isomerase activity, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:endomembrane system;OBMFPVAC.G.S.X.
0.012e-138At5g55580835652mitochondrial transcription termination factor family protein / mTERF family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PMOFVBC.G.S.X.
0.022e-138At5g11270830997OCP3 (OVEREXPRESSOR OF CATIONIC PEROXIDASE 3)Encodes a homeodomain transcription factor involved in mediating resistance to infection by necrotrophic pathogens dependent on perception of jasmonic acid through COI1. Expressed in the nucleus. Downregulated upon fungal infection. Also involved in drought tolerance.C.G.S.X.
0.022e-138At5g60820836203zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFBVC.G.S.X.
0.022e-138At5g55650835659unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.023e-138Glycine maxHgAffx.3736.2.A1_atCB374700--4e+0At5g49015Expressed proteinC.G.S.X.
0.024e-136Hordeum vulgareHVSMEl0003G02r2_atHVSMEl0003G02r2--1e-3At2g27550ATC (ARABIDOPSIS THALIANA CENTRORADIALIS)C.G.S.X.
0.024e-138Oryza sativaOsAffx.18695.1.S1_at---0C.G.S.X.
0.022e-242Populus trichocarpaPtpAffx.207309.1.S1_atpmrna14492hypothetical protein-3e-1At1g68905-C.G.S.X.
0.028e-136Triticum aestivumTa.7522.3.S1_atCA727768--1e+0At5g41050unknown proteinC.G.S.X.
0.022e-136Vitis vinifera1618511_atCF404182hypothetical protein LOC100243219-1e-3At1g67195MIR414 (MICRORNA 414)C.G.S.X.
0.023e-136Zea maysZm.18262.1.A1_atCN845466--5e-1At5g44280RING1A (RING 1A)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0045814Any epigenetic process that stops, prevents or reduces the rate of gene expression.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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