Gene omics information

Query gene ID At5g44260
Gene name zinc finger (CCCH-type) family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.1811.4At5g44260834449zinc finger (CCCH-type) family proteinF:transcription factor activity, nucleic acid binding;P:unknown;C:unknown;MOPFVS.X.H.G.
0.5065.3At5g62280836349unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.4050.8At5g57760835884unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.3338.1At3g47340823888ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1)encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumulation. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.S.X.H.G.
0.2930.3At4g35770829730SEN1 (SENESCENCE 1)Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
63.599.8GSM282697Col_BRZ_rep1GSE11216Brassinazole treatment of arf2 and wild-type dark-grown seedlings
56.999.8E-MEXP-1468-raw-cel-1591138952
55.599.8GSM282699Col_BRZ_rep3GSE11216Brassinazole treatment of arf2 and wild-type dark-grown seedlings
52.699.8GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibition
52.399.8E-MEXP-1468-raw-cel-1591139018
52.299.8GSM282703arf2_brz_2GSE11216Brassinazole treatment of arf2 and wild-type dark-grown seedlings
45.199.8E-MEXP-838-raw-cel-1160703990
44.399.8E-MEXP-838-raw-cel-1160704054
44.399.8GSM282693arf2_brz_1GSE11216Brassinazole treatment of arf2 and wild-type dark-grown seedlings
41.899.8E-MEXP-838-raw-cel-1160703895
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.362e-71270At1g03790839408SOM (SOMNUS)Encodes SOMNUS (SOM), a nucleus-localized CCCH-type zinc finger protein. SOM negatively regulates light-dependent seed germination downstream of PIL5 (AT2G20180).C.G.S.X.
0.062e-654At4g29190829040zinc finger (CCCH-type) family proteinF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;POMFC.G.S.X.
0.042e-448At3g55980824764SZF1 (SALT-INDUCIBLE ZINC FINGER 1)F:transcription factor activity;P:response to chitin, regulation of transcription;C:cellular_component unknown;MOPBFAVC.G.S.X.
0.032e-344At2g25900817131ATCTHputative Cys3His zinc finger protein (ATCTH) mRNA, completeC.G.S.X.
0.012e-344At2g21410816680VHA-A2 (VACUOLAR PROTON ATPASE A2)Vacuolar proton ATPase subunit VHA-a isoform 2. Localized in the tonoplast.C.G.S.X.
0.044e-240At2g19810816500zinc finger (CCCH-type) family proteinF:transcription factor activity, nucleic acid binding;P:regulation of transcription;C:unknown;POMC.G.S.X.
0.024e-240At2g40140818605CZF1F:transcription factor activity;P:defense response to fungus, response to cold, response to chitin, regulation of transcription;C:cellular_component unknown;MPOFBAVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.112e-138Glycine maxGmaAffx.79121.1.S1_atCA801737--1e-12At4g29190zinc finger (CCCH-type) family proteinC.G.S.X.
0.022e-240Hordeum vulgareContig1239_s_atContig1239--1e-15At1g01620PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C)C.G.S.X.
0.032e-552Oryza sativaOs01g0192000AK100770.1-Zn-finger, C-x8-C-x5-C-x3-H type domain containingprotein2e-5At5g44260zinc finger (CCCH-type) family proteinC.G.S.X.
0.142e-1791Populus trichocarpaPtpAffx.222332.1.S1_s_atpmrna39674hypothetical protein-2e-17At5g44260zinc finger (CCCH-type) family proteinC.G.S.X.
0.024e-240Triticum aestivumTaAffx.31061.1.S1_atCA619888--2e-2At1g44770unknown proteinC.G.S.X.
0.027e-134Vitis vinifera1616555_s_atCB343780--1e+1At4g35165unknown proteinC.G.S.X.
0.021e+034Zea maysZm.9625.1.A1_x_atBM340508Hypothetical protein LOC100216879-3e-1At4g33660unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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