CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g44260

Gene name zinc finger (CCCH-type) family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.18 11.4 At5g44260 834449 zinc finger (CCCH-type) family protein F:transcription factor activity, nucleic acid binding;P:unknown;C:unknown;MOPFV S.X. H.G.
0.50 65.3 At5g62280 836349 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.40 50.8 At5g57760 835884 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.33 38.1 At3g47340 823888 ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1) encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumulation. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. S.X. H.G.
0.29 30.3 At4g35770 829730 SEN1 (SENESCENCE 1) Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
63.5 99.8 GSM282697 Col_BRZ_rep1 GSE11216 Brassinazole treatment of arf2 and wild-type dark-grown seedlings
56.9 99.8 E-MEXP-1468-raw-cel-1591138952
55.5 99.8 GSM282699 Col_BRZ_rep3 GSE11216 Brassinazole treatment of arf2 and wild-type dark-grown seedlings
52.6 99.8 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
52.3 99.8 E-MEXP-1468-raw-cel-1591139018
52.2 99.8 GSM282703 arf2_brz_2 GSE11216 Brassinazole treatment of arf2 and wild-type dark-grown seedlings
45.1 99.8 E-MEXP-838-raw-cel-1160703990
44.3 99.8 E-MEXP-838-raw-cel-1160704054
44.3 99.8 GSM282693 arf2_brz_1 GSE11216 Brassinazole treatment of arf2 and wild-type dark-grown seedlings
41.8 99.8 E-MEXP-838-raw-cel-1160703895
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.36 2e-71 270 At1g03790 839408 SOM (SOMNUS) Encodes SOMNUS (SOM), a nucleus-localized CCCH-type zinc finger protein. SOM negatively regulates light-dependent seed germination downstream of PIL5 (AT2G20180). C.G. S.X.
0.06 2e-6 54 At4g29190 829040 zinc finger (CCCH-type) family protein F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;POMF C.G. S.X.
0.04 2e-4 48 At3g55980 824764 SZF1 (SALT-INDUCIBLE ZINC FINGER 1) F:transcription factor activity;P:response to chitin, regulation of transcription;C:cellular_component unknown;MOPBFAV C.G. S.X.
0.03 2e-3 44 At2g25900 817131 ATCTH putative Cys3His zinc finger protein (ATCTH) mRNA, complete C.G. S.X.
0.01 2e-3 44 At2g21410 816680 VHA-A2 (VACUOLAR PROTON ATPASE A2) Vacuolar proton ATPase subunit VHA-a isoform 2. Localized in the tonoplast. C.G. S.X.
0.04 4e-2 40 At2g19810 816500 zinc finger (CCCH-type) family protein F:transcription factor activity, nucleic acid binding;P:regulation of transcription;C:unknown;POM C.G. S.X.
0.02 4e-2 40 At2g40140 818605 CZF1 F:transcription factor activity;P:defense response to fungus, response to cold, response to chitin, regulation of transcription;C:cellular_component unknown;MPOFBAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 2e-1 38 Glycine max GmaAffx.79121.1.S1_at CA801737 - - 1e-12 At4g29190 zinc finger (CCCH-type) family protein C.G. S.X.
0.02 2e-2 40 Hordeum vulgare Contig1239_s_at Contig1239 - - 1e-15 At1g01620 PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C) C.G. S.X.
0.03 2e-5 52 Oryza sativa Os01g0192000 AK100770.1 - Zn-finger, C-x8-C-x5-C-x3-H type domain containingprotein 2e-5 At5g44260 zinc finger (CCCH-type) family protein C.G. S.X.
0.14 2e-17 91 Populus trichocarpa PtpAffx.222332.1.S1_s_at pmrna39674 hypothetical protein - 2e-17 At5g44260 zinc finger (CCCH-type) family protein C.G. S.X.
0.02 4e-2 40 Triticum aestivum TaAffx.31061.1.S1_at CA619888 - - 2e-2 At1g44770 unknown protein C.G. S.X.
0.02 7e-1 34 Vitis vinifera 1616555_s_at CB343780 - - 1e+1 At4g35165 unknown protein C.G. S.X.
0.02 1e+0 34 Zea mays Zm.9625.1.A1_x_at BM340508 Hypothetical protein LOC100216879 - 3e-1 At4g33660 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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