CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g44080

Gene name bZIP transcription factor family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.49 63.5 At5g44080 834431 bZIP transcription factor family protein F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PMOFV S.X. H.G.
0.83 91.4 At1g28420 839740 HB-1 (homeobox-1) F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MOFBPVA S.X. H.G.
0.81 90.4 At1g65440 842855 GTB1 Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly. S.X. H.G.
0.78 88.6 At1g15940 838164 binding F:binding;P:biological_process unknown;C:unknown;MOBFPVA S.X. H.G.
0.76 87.4 At2g25650 817106 DNA-binding storekeeper protein-related F:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;OMFPBVA S.X. H.G.
0.73 85.5 At3g07780 819969 OBE1 (OBERON1) Encodes a nuclear PHD finger protein that is functionally redundant with OBE2 and plays an important role in the maintenance and/or establishment of the root and shoot apical meristems. S.X. H.G.
0.69 82.9 At1g15200 838086 protein-protein interaction regulator family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA S.X. H.G.
0.69 82.9 At5g19900 832112 PRLI-interacting factor, putative F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFPBVA S.X. H.G.
0.69 82.9 At4g25020 828605 KOW domain-containing protein / D111/G-patch domain-containing protein F:nucleic acid binding;P:biological_process unknown;C:intracellular;MFPO S.X. H.G.
0.67 81.6 At1g71170 843457 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein F:coenzyme binding, oxidoreductase activity, binding, phosphogluconate dehydrogenase (decarboxylating) activity, catalytic activity;P:pentose-phosphate shunt, metabolic process;C:cellular_component unknown;BOMFPA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
312.2 100.0 GSM311281 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
267.6 100.0 GSM284394 Arabidopsis GCE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
215.9 100.0 GSM284392 Arabidopsis GCE1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
182.6 100.0 GSM284395 Arabidopsis GPSc1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
165.7 100.0 GSM311293 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
147.9 99.9 GSM311291 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
147.6 99.9 GSM284393 Arabidopsis GCE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
144.8 99.9 GSM311282 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
113.6 99.9 GSM284389 Arabidopsis GMPE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
109.6 99.9 GSM311284 Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.28 3e-42 173 At1g03970 839356 GBF4 encodes a basic leucine zipper G-box binding factor that can bind to G-box motifs only as heterodimers with GBF2 or GBF3. A single amino acid change can confer G-box binding as homodimers. C.G. S.X.
0.02 8e-3 42 At3g11590 820332 unknown protein F:unknown;P:unknown;C:plasma membrane;MOBFPAV C.G. S.X.
0.04 3e-2 40 At5g28610 832960 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVB C.G. S.X.
0.02 3e-2 40 At5g44280 834451 RING1A (RING 1A) Encodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1b, a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression. C.G. S.X.
0.02 3e-2 40 At4g09820 826571 TT8 (TRANSPARENT TESTA 8) TT8 is a regulation factor that acts in a concerted action with TT1, PAP1 and TTG1 on the regulation of flavonoid pathways, namely proanthocyanidin and anthocyanin biosynthesis. Affects dihydroflavonol 4-reductase gene expression. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. Also important for important for marginal trichome development. C.G. S.X.
0.02 1e-1 38 At5g15810 831438 N2,N2-dimethylguanosine tRNA methyltransferase family protein F:RNA binding, tRNA (guanine-N2-)-methyltransferase activity;P:tRNA processing;C:cellular_component unknown;OMAFBP C.G. S.X.
0.03 1e-1 38 At5g55430 835636 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFVPBA C.G. S.X.
0.01 1e-1 38 At5g17020 831565 XPO1A Encodes a member of the exportin protein family (XPO1A) which functions as receptors for nuclear export. Binds to a variety of proteins having leucine rich export signals.Along with XPO1B involved with development of the male and female gametophytes. C.G. S.X.
0.02 1e-1 38 At5g16020 831459 stress protein-related F:molecular_function unknown;P:unknown;C:endomembrane system;BOAPF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 2e-1 38 Glycine max GmaAffx.46819.2.S1_at BM524950 transcription factor bZIP81 - 5e-2 At5g44080 bZIP transcription factor family protein C.G. S.X.
0.04 4e+0 32 Hordeum vulgare HZ51B11r_at HZ51B11r - - 9e+0 At1g23440 pyrrolidone-carboxylate peptidase family protein C.G. S.X.
0.04 2e-1 38 Oryza sativa OsAffx.23713.1.S1_at - - - 0 C.G. S.X.
0.07 3e-15 83 Populus trichocarpa PtpAffx.205612.1.S1_at pmrna11079 hypothetical protein - 1e-17 At1g03970 GBF4 C.G. S.X.
0.04 5e-1 36 Triticum aestivum TaAffx.51251.1.S1_at CA728679 - - 2e+0 At4g21500 unknown protein C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1621867_at CF516530 - - 5e-2 At5g66000 unknown protein C.G. S.X.
0.02 3e+0 32 Zea mays ZmAffx.871.1.A1_at AI770769 - - 8e-1 At1g69760 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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