CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g44030

Gene name CESA4 (CELLULOSE SYNTHASE A4)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g44030 834426 CESA4 (CELLULOSE SYNTHASE A4) Encodes a cellulose synthase involved in secondary cell wall biosynthesis. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling. S.X. H.G.
1.00 100.0 At5g15630 831417 IRX6 Encodes a member of the COBRA family, similar to phytochelatin synthetase. Involved in secondary cell wall biosynthesis. Mutants make smaller plants with reduced levels of cellulose and cell wall sugars. S.X. H.G.
0.95 97.0 At4g27435 828852 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.95 97.0 At4g28500 828968 ANAC073 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 73) F:transcription factor activity, transcription activator activity;P:multicellular organismal development, regulation of secondary cell wall thickening;C:nucleus;PO S.X. H.G.
0.95 97.0 At2g38080 818386 IRX12 (IRREGULAR XYLEM 12) Encodes a protein with similarity to putative laccase, a member of laccase family (17 members in Arabidopsis). Might be involved in cell wall biosynthesis. Mutants have a mild irregular xylem phenotype. S.X. H.G.
0.95 97.0 At5g17420 831608 IRX3 (IRREGULAR XYLEM 3) Encodes a xylem-specific cellulose synthase that is phosphorylated on one or more serine residues (on either S185 or one of S180 or S181). S.X. H.G.
0.95 97.0 At5g67210 836856 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB S.X. H.G.
0.95 97.0 At5g54690 835558 GAUT12 (GALACTURONOSYLTRANSFERASE 12) Encodes a protein with putative galacturonosyltransferase activity. Mutants defective in this gene displayed a notable reduction in xylose (>50%) in the cell walls from stems and roots and a reduction in cellulose (~25%). S.X. H.G.
0.93 96.4 At3g16920 820947 chitinase F:chitinase activity;P:cell wall macromolecule catabolic process;C:unknown;PBMOF S.X. H.G.
0.93 96.4 At3g18660 821397 PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) Plants expressing an RNAi construct specifically targeting PGSIP1 was shown to have a dramatically reduced amount of starch. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
222.4 100.0 E-MEXP-265-raw-cel-414617695
203.3 100.0 E-MEXP-265-raw-cel-414618491
201.7 100.0 E-MEXP-265-raw-cel-414618796
194.0 100.0 GSM131656 ATGE_27_B GSE5633 AtGenExpress: Developmental series (shoots and stems)
181.2 100.0 GSM131655 ATGE_27_A GSE5633 AtGenExpress: Developmental series (shoots and stems)
175.6 100.0 E-MEXP-265-raw-cel-414618394
169.8 100.0 E-MEXP-265-raw-cel-414618291
160.5 99.9 E-MEXP-265-raw-cel-414618585
152.9 99.9 GSM131657 ATGE_27_C GSE5633 AtGenExpress: Developmental series (shoots and stems)
149.2 99.9 GSM133753 Turner_A-7-Turne-WT-Base1_SLD GSE5729 Role of COV in vascular patterning
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.22 4e-29 131 At4g18780 827612 IRX1 (IRREGULAR XYLEM 1) Encodes a member of the cellulose synthase family involved in secondary cell wall biosynthesis. Mutants have abnormal xylem formation, reduced cellulose content, and enhanced drought and osmotic stress tolerance. Mediates resistance towards bacterial pathogens via ABA. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling. C.G. S.X.
0.24 1e-28 129 At5g17420 831608 IRX3 (IRREGULAR XYLEM 3) Encodes a xylem-specific cellulose synthase that is phosphorylated on one or more serine residues (on either S185 or one of S180 or S181). C.G. S.X.
0.22 3e-26 121 At5g05170 830399 CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1) Encodes a cellulose synthase isomer. CESA3 mutants have cellulose defect in the primary cell wall. Multiple lines of evidence suggest that CESA3, along with CESA1 and CESA6 are present in the same plasma membrane complex for cellulose biosynthesis. C.G. S.X.
0.19 5e-22 107 At4g32410 829376 CESA1 (CELLULOSE SYNTHASE 1) Encodes a cellulose synthase isomer. CESA1 mutants have cellulose defect in the primary cell wall. Multiple lines of evidence suggest that CESA1, along with CESA3 and CESA6 are present in the same plasma membrane complex for cellulose biosynthesis. lasma membrane complex for cellulose biosynthesis. C.G. S.X.
0.18 1e-16 89 At2g25540 817092 CESA10 (CELLULOSE SYNTHASE 10) cellulose synthase C.G. S.X.
0.19 5e-16 87 At5g64740 836595 CESA6 (CELLULOSE SYNTHASE 6) Encodes a cellulose synthase isomer. CESA6 mutants have cellulose defect in the primary cell wall. Multiple lines of evidence suggest that CESA6, along with CESA1 and CESA3 are present in the same plasma membrane complex for cellulose biosynthesis. CESA2 and CESA5 are related to CESA6, having partially redundant roles. C.G. S.X.
0.19 3e-14 81 At4g39350 830090 CESA2 (CELLULOSE SYNTHASE A2) Encodes a cellulose synthase isomer, related to CESA6. C.G. S.X.
0.11 1e-13 79 At2g21770 816713 CESA9 (CELLULOSE SYNTHASE A9) cellulose synthase, related to CESA6. C.G. S.X.
0.11 2e-12 75 At5g09870 830847 CESA5 (CELLULOSE SYNTHASE 5) Encodes a cellulose synthase isomer, related to CESA6. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 6e-44 180 Glycine max Gma.6331.1.S1_at BQ612445 - - 2e-44 At5g44030 CESA4 (CELLULOSE SYNTHASE A4) C.G. S.X.
0.22 4e-18 93 Hordeum vulgare Contig3478_at Contig3478 - - 1e-115 At5g05170 CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1) C.G. S.X.
0.20 1e-33 147 Oryza sativa Os07g0424400 AK120236.1 - Cellulose synthase-7 1e-51 At2g21770 CESA9 (CELLULOSE SYNTHASE A9) C.G. S.X.
0.40 3e-46 188 Populus trichocarpa Ptp.666.1.S1_at AY573571.1 cellulose synthase - 2e-46 At5g44030 CESA4 (CELLULOSE SYNTHASE A4) C.G. S.X.
0.24 2e-15 85 Triticum aestivum Ta.27649.1.S1_at AB158407.1 CesA protein - 2e-80 At5g05170 CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1) C.G. S.X.
0.14 3e-36 153 Vitis vinifera 1608897_at CB973221 hypothetical protein LOC100241197 - 1e-36 At5g44030 CESA4 (CELLULOSE SYNTHASE A4) C.G. S.X.
0.18 1e-27 125 Zea mays ZmAffx.13.1.S1_s_at AY372245.1 cellulose synthase 11 - 2e-61 At4g18780 IRX1 (IRREGULAR XYLEM 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009863 A series of molecular signals mediated by salicylic acid.
X GO:0009867 A series of molecular signals mediated by jasmonic acid.
X GO:0009873 A series of molecular signals mediated by ethylene (ethene).
X GO:0042742 Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
X GO:0050832 Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
X GO:0009834 The chemical reactions and pathways resulting in the formation of inextensible cellulose and pectin-containing cell walls that are formed between the plasma membrane and primary cell wall after cell expansion is complete. An example of this is found in Arabidopsis thaliana.
X GO:0030244 The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation.
S GO:0009832 The chemical reactions and pathways resulting in the formation of the cellulose and pectin-containing cell wall. An example of this is found in Arabidopsis thaliana.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00021 Cellulose biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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