CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g43980

Gene name PDLP1 (PLASMODESMATA-LOCATED PROTEIN 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.25 22.6 At5g43980 834421 PDLP1 (PLASMODESMATA-LOCATED PROTEIN 1) Encodes a plasmodesmal protein that affects the intercellular movement of molecules through the plasmodesmata. The cytoplasmic C-terminal portion of the protein is connected to the apoplastic N-terminal portion of the protein by a single transmembrane domain (TMD). It is transported to the plasmodesmata through the secretory pathway. PDLP1 has two DUF26 domains and a signal peptide, but the proper localization of the protein appears to depend on the TMD. S.X. H.G.
0.89 94.6 At2g01610 814690 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.89 94.6 At3g27400 822361 pectate lyase family protein F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO S.X. H.G.
0.86 93.1 At1g71380 843479 ATCEL3 (ARABIDOPSIS THALIANA CELLULASE 3) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plasma membrane, plant-type cell wall;PBMOF S.X. H.G.
0.50 65.3 At2g20800 816609 NDB4 (NAD(P)H dehydrogenase B4) F:NADH dehydrogenase activity;P:unknown;C:extrinsic to mitochondrial inner membrane, mitochondrion, plastid;BOFPAM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
199.2 100.0 GSM133947 Murray_2-3_T4-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
155.1 99.9 GSM133948 Murray_2-4_T6-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
151.3 99.9 GSM133950 Murray_2-6_T10-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
132.1 99.9 GSM134206 Murray_3-3_D5-GROWTH_Rep1_ATH1 GSE5750 Growth of suspension-cultured cells
124.1 99.9 GSM133945 Murray_2-1_T0-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
118.5 99.9 GSM133949 Murray_2-5_T8-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
109.9 99.9 GSM134202 Murray_3-1_D1-GROWTH_Rep1_ATH1 GSE5750 Growth of suspension-cultured cells
109.2 99.9 E-ATMX-13-raw-cel-1556149807
103.8 99.9 GSM134208 Murray_3-4_D7-GROWTH_Rep1_ATH1 GSE5750 Growth of suspension-cultured cells
101.7 99.9 GSM133952 Murray_2-8_T14-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 8e-6 52 At3g50870 824251 MNP (MONOPOLE) mutant has Embryo defect; GATA Factor Transcriptional Regulator C.G. S.X.
0.02 5e-4 46 At3g24550 822051 ATPERK1 (PROLINE EXTENSIN-LIKE RECEPTOR KINASE 1) encodes an ortholog of Brassica napus proline extensin-like receptor kinase. Expression of the brassica gene is induced by wounding and fungal infection. C.G. S.X.
0.03 7e-3 42 At5g52440 835320 HCF106 HCF106; nuclear gene for chloroplast. Thylakoid membrane delta pH translocation pathway component protein; related to Escherichia coli TatA and TatB C.G. S.X.
0.02 7e-3 42 At4g16100 827296 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.02 7e-3 42 At3g19540 821490 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PMFVBO C.G. S.X.
0.02 7e-3 42 At1g30100 839889 NCED5 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 5) Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene increases during the first 6h of imbibition. C.G. S.X.
0.01 7e-3 42 At1g61080 842400 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MBOFPVA C.G. S.X.
0.03 3e-2 40 At5g10380 830902 RING1 Encodes a RING finger domain protein with E3 ligase activity that is localized to the lipid rafts of the plasma membrane. Expression is increased in response to fungal pathogen. May be involved in regulation of programmed cell death by facilitating degredation of regulation of PDC activators. C.G. S.X.
0.01 3e-2 40 At5g11700 831042 glycine-rich protein F:unknown;P:unknown;C:vacuole;BMOPFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-2 42 Glycine max Gma.16928.1.S1_at AW203450 - - 1e-3 At1g30475 - C.G. S.X.
0.03 1e-2 40 Hordeum vulgare Contig15910_at Contig15910 - - 3e-4 At1g02710 glycine-rich protein C.G. S.X.
0.03 6e-2 40 Oryza sativa OsAffx.27742.1.S1_at - - - 0 C.G. S.X.
0.04 4e-2 40 Populus trichocarpa PtpAffx.200482.1.S1_at pmrna972 hypothetical protein - 5e-2 At1g02405 proline-rich family protein C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.113217.1.S1_at CA617215 - - 2e+0 At5g52940 unknown protein C.G. S.X.
0.03 3e-2 38 Vitis vinifera 1619399_s_at CB914618 - - 1e-1 At2g30560 glycine-rich protein C.G. S.X.
0.02 3e+0 32 Zea mays ZmAffx.513.1.A1_at AI692067 - - 1e+1 At4g05260 ubiquitin family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0010497 The movement of substances between cells via plasmodesmata. Plasmodesmata is a fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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