Gene omics information

Query gene ID At5g43930
Gene name transducin family protein / WD-40 repeat family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4355.3At5g43930834415transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:chloroplast;MBFOPAS.X.H.G.
0.7586.9At5g54310835519AGD5 (ARF-GAP domain 5)A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.S.X.H.G.
0.7586.9At5g64920836616CIP8 (COP1-INTERACTING PROTEIN 8)Encodes a RING-H2 protein that interacts with the RING finger domain of COP1. CIP8 exhibits a strong interaction with the E2 ubiquitin conjugating enzyme AtUBC8 through its N-terminal domain and promotes ubiquitination in an E2-dependent fashion in vitro. It is possible that the AtUBC8-CIP8 module might interact with COP1 in vivo, thereby participating in proteasome-mediated degradation of HY5.S.X.H.G.
0.7385.5At1g15880838158GOS11 (golgi snare 11)Golgi SNARE 11 protein (GOS11)S.X.H.G.
0.7284.8At1g33250840219fringe-related proteinF:transferase activity, transferring glycosyl groups;P:unknown;C:chloroplast, membrane;MPFOS.X.H.G.
0.7184.2At4g38260829983unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMFPAVS.X.H.G.
0.7083.5At4g00720828023ATSK32 (SHAGGY-LIKE PROTEIN KINASE 32)F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytosol;MOPFBVAS.X.H.G.
0.6982.9At5g23670832432LCB2Encodes the LCB2 subunit of serine palmitoyltransferase, an enzyme involved in sphingosine biosynthesis. The protein is localized to the endoplasmic reticulum.S.X.H.G.
0.6982.9At5g32440833203-F:unknown;P:unknown;C:chloroplast;OPMFBS.X.H.G.
0.6579.6At1g71410843482protein kinase family proteinF:binding, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:membrane;MOFPBVAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
35.299.7GSM133117RIKEN-YAMAUCHI1AGSE5687AtGenExpress: Different temperature treatment of seeds
29.899.7GSM128662Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
27.799.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
27.499.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
27.399.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
26.999.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
25.999.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
25.599.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
25.199.6GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
24.999.6GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.630634At1g04140839272transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:chloroplast;MBFOPAC.G.S.X.
0.012e-242At5g12370831112SEC10 (EXOCYST COMPLEX COMPONENT SEC10)F:molecular_function unknown;P:exocytosis, vesicle docking;C:plasma membrane, membrane, exocyst;FMPOBC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.188e-1893Glycine maxGma.15007.3.S1_s_atCD394083--2e-20At1g04140transducin family protein / WD-40 repeat family proteinC.G.S.X.
0.092e-1997Hordeum vulgareContig8648_s_atContig8648--8e-16At1g04140transducin family protein / WD-40 repeat family proteinC.G.S.X.
0.113e-1585Oryza sativaOs09g0296900AK072913.1-Peptidase S9A, prolyl oligopeptidase, N-terminalbeta-propeller domain containing protein2e-15At5g43930transducin family protein / WD-40 repeat family proteinC.G.S.X.
0.182e-37159Populus trichocarpaPtpAffx.150481.2.A1_atCV265836hypothetical protein-5e-38At5g43930transducin family protein / WD-40 repeat family proteinC.G.S.X.
0.062e-1481Triticum aestivumTa.23347.1.S1_atBJ283188--1e-11At1g04140transducin family protein / WD-40 repeat family proteinC.G.S.X.
0.116e-1891Vitis vinifera1614475_atCF609346hypothetical protein LOC100263178-9e-18At5g43930transducin family protein / WD-40 repeat family proteinC.G.S.X.
0.084e-2099Zea maysZm.8702.1.A1_atAI734669--5e-19At1g04140transducin family protein / WD-40 repeat family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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