CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g43770

Gene name proline-rich family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g43770 834399 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MBPOFVA S.X. H.G.
0.88 94.0 At2g23640 816896 reticulon family protein (RTNLB13) F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MPO S.X. H.G.
0.74 86.1 At1g75490 843885 DNA binding / transcription factor encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought. S.X. H.G.
0.72 84.8 At5g55750 835669 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBVA S.X. H.G.
0.65 79.6 At3g61040 825276 CYP76C7 encodes a protein with cytochrome P450 domain S.X. H.G.
0.64 78.9 At1g29680 839845 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPF S.X. H.G.
0.60 75.7 At2g19900 816509 ATNADP-ME1 (NADP-malic enzyme 1) The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME1 is expressed in response to developmental and cell-specific signals. S.X. H.G.
0.60 75.7 At5g55240 835617 caleosin-related family protein / embryo-specific protein, putative F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;PFO S.X. H.G.
0.57 73.8 At5g16460 831507 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO S.X. H.G.
0.55 70.6 At5g01670 831701 aldose reductase, putative F:oxidoreductase activity;P:oxidation reduction;C:unknown;BMOFPA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
1194.9 100.0 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
933.9 100.0 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
283.2 100.0 GSM131706 ATGE_84_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
270.1 100.0 GSM131707 ATGE_84_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
236.9 100.0 GSM131708 ATGE_84_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
220.0 100.0 GSM131701 ATGE_82_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
201.2 100.0 GSM133117 RIKEN-YAMAUCHI1A GSE5687 AtGenExpress: Different temperature treatment of seeds
197.1 100.0 GSM131703 ATGE_83_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
190.1 100.0 GSM131705 ATGE_83_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
180.1 100.0 GSM131702 ATGE_82_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 3e-1 36 At5g26710 832718 glutamate-tRNA ligase, putative / glutamyl-tRNA synthetase, putatuve / GluRS, putative F:glutamate-tRNA ligase activity;P:glutamyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:cytoplasm;BOMFAP C.G. S.X.
0.01 1e+0 34 At5g05480 830431 unknown protein F:molecular_function unknown;P:biological_process unknown;C:vacuole;FPABO C.G. S.X.
0.01 1e+0 34 At5g16910 831554 CSLD2 (CELLULOSE-SYNTHASE LIKE D2) encodes a gene similar to cellulose synthase. Located in golgi membranes. C.G. S.X.
0.02 1e+0 34 At4g29310 829053 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PO C.G. S.X.
0.01 1e+0 34 At3g29410 822602 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;PO C.G. S.X.
0.02 1e+0 34 At3g14140 820631 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;BOMPF C.G. S.X.
0.01 1e+0 34 At1g54385 841880 binding F:binding;P:spliceosome assembly, nuclear mRNA splicing, via spliceosome;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e+0 34 Glycine max GmaAffx.87561.1.S1_x_at BQ473189 - - 4e-3 At1g26250 proline-rich extensin, putative C.G. S.X.
0.02 8e+0 30 Hordeum vulgare Contig5607_s_at Contig5607 - - 4e-1 At3g17160 unknown protein C.G. S.X.
0.03 2e+0 34 Oryza sativa Os11g0626700 AK120168.1 - Hypothetical protein 1e+1 At5g05500 pollen Ole e 1 allergen and extensin family protein C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.223253.1.S1_at pmrna41156 hypothetical protein - 6e-2 At3g13780 - C.G. S.X.
0.04 1e+0 34 Triticum aestivum TaAffx.109032.1.S1_at CA681038 - - 6e-1 At5g43770 proline-rich family protein C.G. S.X.
0.03 5e+0 30 Vitis vinifera 1620485_at CF607379 hypothetical protein LOC100242692 - 3e-1 At3g52910 AtGRF4 (GROWTH-REGULATING FACTOR 4) C.G. S.X.
0.03 2e+0 32 Zea mays Zm.13273.2.A1_x_at AI734332 - - 3e+0 At4g10130 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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