Gene omics information

Query gene ID At5g43320
Gene name ckl8 (Casein Kinase I-like 8)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.1811.4At5g43320834350ckl8 (Casein Kinase I-like 8)F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPBFVAS.X.H.G.
0.6176.7At1g26830839226ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3)Cullin, putative, similar to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with other components of E3 ligase complex suggesting it functions in RUB-modification. Forms complexes with BTB domain proteins forming a novel class of E3-based ubiquitin protein-ligase complexes. Mutant is early flowering and has a reduced sensitivity to far-red light. cul3a/cul3b homozygous/heterozygous plants are embryo lethal.S.X.H.G.
0.5267.4At4g11860826793-F:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus, plasma membrane;MFOPBS.X.H.G.
0.5065.3At1g47550841164unknown proteinF:unknown;P:biological_process unknown;C:plasma membrane, exocyst;MFPOBAS.X.H.G.
0.4152.4At5g43560834376meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAS.X.H.G.
0.3541.6At5g50230835088nucleotide bindingF:nucleotide binding;P:multicellular organismal development;C:heterotrimeric G-protein complex;MFOBPAVS.X.H.G.
0.3338.1At1g75850843918VPS35B (VPS35 HOMOLOG B)F:unknown;P:intracellular protein transport, retrograde transport, endosome to Golgi;C:cellular_component unknown;MFOPBS.X.H.G.
0.3032.1At3g61710825344autophagy protein Apg6 familyF:molecular_function unknown;P:autophagy;C:unknown;MOFBPVAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
14.899.4GSM311295Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
12.099.3GSM133966Fukuda_1-11_10A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
11.099.2GSM284395Arabidopsis GPSc1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
10.699.2GSM142904WW002_ATH1_A1-willa-CON-REP2GSE6181Assembly of the cell wall pectic matrix.
10.099.2GSM284396Arabidopsis GPSc2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
9.999.1GSM142902WW001_ATH1_A1-WILLA-CONGSE6181Assembly of the cell wall pectic matrix.
9.899.1GSM133964Fukuda_1-9_8A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
9.799.1GSM265411Arabidopsis, whole roots, -Fe, replicate 1GSE10496Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
9.299.1GSM133961Fukuda_1-6_4B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
8.999.0GSM133967Fukuda_1-12_10B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.710981At1g04440839520CKL13 (CASEIN KINASE LIKE 13)F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPBFVAC.G.S.X.
0.512e-109397At3g23340821915ckl10 (Casein Kinase I-like 10)F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPBFVAC.G.S.X.
0.455e-76286At4g14340827076CKI1 (CASEIN KINASE I)Phosphorylates serine or threonine residues that are near and C-terminal to acidic side chains on a variety of target proteinsC.G.S.X.
0.282e-56220At4g28540828972CKL6 (CASEIN KINASE I-LIKE 6)F:protein serine/threonine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:plasmodesma;MOPBFVAC.G.S.X.
0.323e-40167At5g44100834433ckl7 (Casein Kinase I-like 7)F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPBFVAC.G.S.X.
0.196e-23109At5g57015835804ckl12 (Casein Kinase I-like 12)F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytoplasm;MOPBFVAC.G.S.X.
0.322e-1997At1g03930839368ADK1 (dual specificity kinase 1)Phosphorylates serine, threonine, and tyrosineC.G.S.X.
0.139e-1995At4g28880829009ckl3 (Casein Kinase I-like 3)F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOBPFVAC.G.S.X.
0.186e-1789At4g26100828716CK1 (CASEIN KINASE 1)Encodes a member of the casein kinase 1 protein family that is expressed in punctate particles at the cell periphery suggesting possible plasmodesmatal localization.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.412e-57224Glycine maxGmaAffx.45359.2.S1_atBQ453165--1e-60At4g28540CKL6 (CASEIN KINASE I-LIKE 6)C.G.S.X.
0.239e-39161Hordeum vulgareContig5413_atContig5413--4e-34At3g23340ckl10 (Casein Kinase I-like 10)C.G.S.X.
0.252e-27125Oryza sativaOs04g0514800AK111987.1-Dual specificity kinase 17e-48At1g03930ADK1 (dual specificity kinase 1)C.G.S.X.
0.512e-76287Populus trichocarpaPtpAffx.75129.2.S1_s_atCF231604hypothetical protein-9e-120At3g23340ckl10 (Casein Kinase I-like 10)C.G.S.X.
0.163e-963Triticum aestivumTaAffx.83979.1.S1_atCA744506--2e-9At3g23340ckl10 (Casein Kinase I-like 10)C.G.S.X.
0.431e-98359Vitis vinifera1610674_atCF511328hypothetical protein LOC100242639-2e-158At3g23340ckl10 (Casein Kinase I-like 10)C.G.S.X.
0.269e-54210Zea maysZm.3824.1.S1_atAW424570--2e-35At3g23340ckl10 (Casein Kinase I-like 10)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006468The process of introducing a phosphate group on to a protein.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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