CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g43030

Gene name DC1 domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.62 77.3 At5g43030 834318 DC1 domain-containing protein F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO S.X. H.G.
0.90 95.1 At2g17080 816213 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMOFBV S.X. H.G.
0.88 94.0 At2g32610 817821 ATCSLB01 encodes a gene similar to cellulose synthase S.X. H.G.
0.87 93.5 At3g47400 823894 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBOFVMA S.X. H.G.
0.87 93.5 At5g16230 831483 acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative F:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:chloroplast;PBOM S.X. H.G.
0.87 93.5 At1g06090 837118 fatty acid desaturase family protein F:oxidoreductase activity;P:lipid metabolic process;C:cellular_component unknown;BOMFPV S.X. H.G.
0.87 93.5 At5g60530 836174 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:unknown;C:endomembrane system;MOFBPVA S.X. H.G.
0.86 93.1 At2g32620 817822 ATCSLB02 encodes a gene similar to cellulose synthase S.X. H.G.
0.86 93.1 At3g06460 819823 GNS1/SUR4 membrane family protein F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MFOPV S.X. H.G.
0.86 93.1 At5g58784 835994 dehydrodolichyl diphosphate synthase F:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:endomembrane system;OBAFMP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
452.4 100.0 GSM184477 Lateral Root Cap root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
250.5 100.0 GSM184480 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
248.5 100.0 GSM184488 Epidermis&Cortex root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
237.7 100.0 GSM184483 Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
214.8 100.0 GSM184481 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
200.9 100.0 GSM266665 Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 4 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
150.7 99.9 GSM184479 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
129.2 99.9 GSM184484 Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
119.2 99.9 GSM184909 Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
97.9 99.9 GSM184485 Epidermis&Cortex root cells 2hr KCl control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.80 0 854 At5g43040 834319 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMO C.G. S.X.
0.06 9e-7 56 At5g26190 832688 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:intracellular;POM C.G. S.X.
0.03 6e-5 50 At2g02690 814798 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PFMO C.G. S.X.
0.04 2e-4 48 At5g44770 834506 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMO C.G. S.X.
0.04 3e-3 44 At1g53340 841769 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:intracellular;POM C.G. S.X.
0.01 1e-2 42 At5g54020 835485 zinc ion binding F:zinc ion binding;P:intracellular signaling cascade;C:intracellular;PMOF C.G. S.X.
0.02 5e-2 40 At5g39471 6241265 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:intracellular;PMO C.G. S.X.
0.01 5e-2 40 At5g46670 834710 CHP-rich zinc finger protein, putative F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 5e-2 40 At3g28650 822495 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 36 Glycine max GmaAffx.29464.1.S1_at CA935890 - - 2e-1 At2g23410 ACPT (Arabidopsis cis-prenyltransferase) C.G. S.X.
0.02 2e+0 34 Hordeum vulgare Contig2692_x_at Contig2692 - - 3e-1 At1g23890 NHL repeat-containing protein C.G. S.X.
0.02 7e+0 34 Oryza sativa OsAffx.2152.1.S1_at - - - 0 C.G. S.X.
0.02 5e+0 34 Populus trichocarpa PtpAffx.69903.1.A1_at CV239074 hypothetical protein - 1e-7 At1g69270 RPK1 (RECEPTOR-LIKE PROTEIN KINASE 1) C.G. S.X.
0.02 4e+0 34 Triticum aestivum TaAffx.57240.1.S1_at CA633974 - - 4e+0 At5g57080 unknown protein C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1612338_at CB983154 - - 1e+0 At5g55150 F-box family protein C.G. S.X.
0.01 1e+0 34 Zea mays Zm.13615.1.A1_at AW091502 hypothetical protein LOC100274068 - 2e+0 At5g63740 zinc finger protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0007242 A series of reactions within the cell that occur as a result of a single trigger reaction or compound.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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