Gene omics information

Query gene ID At5g42940
Gene name zinc finger (C3HC4-type RING finger) family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g42940834306zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBAS.X.H.G.
0.4050.8At5g43130834330TAF4 (TBP-ASSOCIATED FACTOR 4)F:transcription initiation factor activity;P:transcription initiation;C:transcription factor TFIID complex;OMFBPVAS.X.H.G.
0.3948.4At3g12570820437FYDF:unknown;P:unknown;C:chloroplast envelope;PS.X.H.G.
0.3846.7At3g62240825397zinc finger (C2H2 type) family proteinF:protein binding, zinc ion binding;P:unknown;C:intracellular;OMFBPVS.X.H.G.
0.3643.6At1g11480837691eukaryotic translation initiation factor-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBS.X.H.G.
0.3541.6At4g02480827979AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:chloroplast;OBMFPAVS.X.H.G.
0.3439.8At1g04300839551-F:molecular_function unknown;P:biological_process unknown;C:unknown;OMFBPVAS.X.H.G.
0.3338.1At5g50380835106ATEXO70F1 (exocyst subunit EXO70 family protein F1)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.S.X.H.G.
0.3338.1At1g51740841599SYP81 (SYNTAXIN OF PLANTS 81)member of SYP8 Gene FamilyS.X.H.G.
0.3338.1At2g42400818841VOZ2 (VASCULAR PLANT ONE ZINC FINGER PROTEIN 2)F:transcription activator activity;P:biological_process unknown;C:cellular_component unknown;POS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
29.899.7GSM311291Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
29.399.7GSM134208Murray_3-4_D7-GROWTH_Rep1_ATH1GSE5750Growth of suspension-cultured cells
25.199.6E-MEXP-1443-raw-cel-1581869745
24.699.6E-MEXP-1443-raw-cel-1581869803
24.099.6GSM128661Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
23.899.6GSM134206Murray_3-3_D5-GROWTH_Rep1_ATH1GSE5750Growth of suspension-cultured cells
22.699.6GSM284390Arabidopsis GPE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
18.399.5GSM311293Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
17.499.5GSM284393Arabidopsis GCE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
17.399.5GSM284395Arabidopsis GPSc1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.336e-67256At1g45180841086zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBC.G.S.X.
0.044e-654At2g15530816045zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFBVC.G.S.X.
0.033e-448At4g34040829550zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFBVC.G.S.X.
0.023e-448At4g31450829272zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBC.G.S.X.
0.017e-240At1g61560842450MLO6 (MILDEW RESISTANCE LOCUS O 6)A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO6 belongs to the clade IV, with AtMLO2, AtMLO3 and AtMLO12. The gene is expressed during early seedling growth, in roots and lateral root primordia, in flower and fruit abscission zone, in vascular system of cotyledons, young leaves and petals, in mature rosette leaves, in anthers, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).C.G.S.X.
0.023e-138At5g24870832556zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;OMPFBVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.053e-1171Glycine maxGma.721.1.A1_atBE658564--2e-10At1g45180zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.039e-961Hordeum vulgareContig12810_atContig12810--1e-4At1g73760zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.052e-1275Oryza sativaOs04g0185500AK064939.1-Zn-finger, RING domain containing protein2e-12At5g42940zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.076e-963Populus trichocarpaPtpAffx.6691.1.S1_atCV267640hypothetical protein-1e-7At2g15530zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.043e-138Triticum aestivumTa.12892.1.S1_atCA484384--1e-1At5g42940zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.048e-548Vitis vinifera1609955_atCA810705hypothetical protein LOC100267740-8e-2At1g73790unknown proteinC.G.S.X.
0.043e-240Zea maysZm.3958.1.S1_atCK786909hypothetical protein LOC100192681-5e-2At1g45180zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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