CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g42900

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g42900 834301 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.73 85.5 At4g33980 829544 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMO S.X. H.G.
0.67 81.6 At3g07650 819956 COL9 (CONSTANS-LIKE 9) This gene belongs to the CO (CONSTANS) gene family. This gene family is divided in three subgroups: groups III, to which COL9 belongs, is characterised by one B-box (supposed to regulate protein-protein interactions) and a second diverged zinc finger. COL9 downregulates expression of CO (CONSTANS) as well as FT and SOC1 which are known regulatory targets of CO. S.X. H.G.
0.40 50.8 At1g17665 838343 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OPMF S.X. H.G.
0.29 30.3 At5g48250 834878 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:unknown;C:plasma membrane;POM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
71.8 99.9 GSM128675 Underwood_1-28_DC3000-10e8-7h_Rep1_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
67.9 99.9 GSM74900 Wildtype_24H Cold_Rep1 GSE3326 ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
65.4 99.8 GSM74901 Wildtype_24H Cold_Rep2 GSE3326 ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
63.9 99.8 E-TABM-52-raw-cel-1583682926
56.2 99.8 E-TABM-52-raw-cel-1583683182
43.4 99.8 GSM74908 ice1_24H Cold_Rep1 GSE3326 ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
42.3 99.8 E-TABM-52-raw-cel-1583683022
39.3 99.8 E-TABM-52-raw-cel-1583683598
36.2 99.7 GSM74909 ice1_24H Cold_Rep2 GSE3326 ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
34.2 99.7 GSM128727 Pieterse_1-13_Mpersicae-48h_Rep1_ATH1 GSE5525 Transcriptome changes of Arabidopsis during pathogen and insect attack
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 1e-3 44 At4g12000 826807 - F:unknown;P:response to oxidative stress;C:unknown;BOPMFA C.G. S.X.
0.01 1e-3 44 At3g59020 825071 binding / protein transporter F:protein transporter activity, binding;P:intracellular protein transport, protein import into nucleus, docking;C:nucleus, nuclear pore, cytoplasm;OMFBPVA C.G. S.X.
0.02 1e-3 44 At1g20132 6241214 hydrolase, acting on ester bonds / lipase F:hydrolase activity, acting on ester bonds, lipase activity;P:lipid metabolic process;C:endomembrane system;PBOFM C.G. S.X.
0.03 9e-2 38 At5g24890 832558 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFB C.G. S.X.
0.03 9e-2 38 At5g41030 834105 TCP family transcription factor, putative F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PM C.G. S.X.
0.01 9e-2 38 At3g49140 824075 - F:unknown;P:unknown;C:unknown;PBMOFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 8e-3 42 Glycine max HgAffx.23342.1.S1_at BF014507 - - 2e-2 At3g49470 NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2) C.G. S.X.
0.03 2e-1 36 Hordeum vulgare HVSMEa0004C17r2_at HVSMEa0004C17r2 - - 3e-1 At5g42900 unknown protein C.G. S.X.
0.03 7e-1 36 Oryza sativa Os02g0512400 AK073461.1 - Glutaredoxin domain containing protein 6e-16 At3g02000 ROXY1 C.G. S.X.
0.07 5e-1 36 Populus trichocarpa PtpAffx.28269.1.S1_at BU863832 hypothetical protein - 4e-1 At5g42900 unknown protein C.G. S.X.
0.03 4e-1 36 Triticum aestivum Ta.28290.1.S1_at CA676673 - - 1e-4 At4g28840 unknown protein C.G. S.X.
0.02 7e+0 30 Vitis vinifera 1618511_at CF404182 hypothetical protein LOC100243219 - 1e-3 At1g67195 MIR414 (MICRORNA 414) C.G. S.X.
0.03 3e+0 32 Zea mays Zm.1918.1.S1_at AW520033 hypothetical protein LOC100216771 - 6e+0 At5g42900 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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